Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1338g00004 ATGGAATCCTGCAATTGTATTGACCCACAAATGGCAGCTGATGACTTATTGGTGAAATACCAATATATGTCTGATTTCTTCATTGCCCTTGCTTATTTCTCAATCCCTTTGGAGCTTATCTACTTTGTTAAGAAATCAGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCTTTCATAGTTTTATGTGGAGCAACACATCTAATTAATTTATGGACCTTTAGAATTCATTCAAGAACTGTGGCCATTGTAATGACCACTGCTAAGGTTTTAACTGCTGTGGTATCGTGTGCAACTGCCCTCATGCTTGTACATATTATTCCTGATTTATTAAGTGTTAAAACAAGGGAATTATTTTTGAAGAACAAGGCTGCCGAGCTTGATAGAGAAATGGGCCTGATTCGCACACAAGAAGAAACTGGTCGACATGTTAGGATGCTGACTCATGAGATTAGAAGCACTCTTGATAGACACACAATACTGAAAACGACTCTTGTTGAGCTGGGTAGAACTTTGGCACTAGAGGAATGTGCCTTATGGATGCCAACACGAACTGGGTTAGAGCTTCAGCTCTCTTACACACTGCGACAGCAGAACCCAGTTGGATTCACGGTACCCATTCATCTTCCTGTGATTAATCAAGTATTTAGTAGCAACAGGGCAGTAAAAATTTCGCATAATTGTCCAGTTGCTAGATTACGACCTTATGCAGGAAAATACATGCCTGGGGCAGTTGTAGCTGTTCGAGTTCCTCTCCTACATCTTTCTAATTTCCAAATATATGATTGGCCTGAGGTTTCAACTAGAAATTATGCTTTGATGGTTTTGATGCTTCCATCAGATAGCGCTAGACAATGGCATGTGCATGAGTTAGAATTGGTTGAGGTAGCTGTCGCTCTTTCACATGCTGCAATCCTGGAAGAGTCAATGAGGGCAAGGGATCAACTCATGGAGCAGAATGTTGCACTGGATCTGGCAAGAAGAGAAGCAGAAACTGCAATTCGTGCTCGGAATGACTTTTTAGCTGTTATGAACCACGAGATGAGAACTCCCATGCATGCAGTTATTGCACTCTCTTCATTACTACAGGAAACAGATTTGACAGCAGAGCAACGTCTAATGGTGGAGACAATATTGAAAAGCAGTAATTTGTTGGCTACCCTCATCAATGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTCTTCAACTTGAAGAAGCAACATTTAACCTTCATTCTTTGTTCAGAGAGGTCCTTAACTTCATTAAACCTGTTGCATCTGTTAAAAAGTTATCACTCACTTCACATTTAGCTTCAGATTTGCCAATGTATGCCATTGGTGATGAAAAACGTCTCATGCAAACTATTCTGAATGTTGTTGGTAATGCTGTTAAGTTCTCAAAAGAGGGCTGCATTTCCATAACTGCTTTCATTGCAAAGCCTGAATCCTTTAGGGATCCTAGAATTCCTGACTTTCTTCCAGTGCCAAGTGATAGCCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATCAGGAATCAATCCACAGGACATCCCAAAGTTATTCACCAAGTTTGCACAAAACCAATCTTTAGCGACAAGAAATCCTGCTGGAAGTGGACTTGGCCTGGCAATTTGTAGGAGGTTTGTAAATCTTATGGAAGGGCATATTTGGATTGAAAGTGAAGGTATTGGTAAAGGATGTACAGCCACGTTTATTGTAAAACTTGGAATCCCAGACCGATCAAATGAACTTAAGCTACCTTTTGTACCTAAAGTTCCGGGAAATCATGTTCATGGACGTACAAACTTTGCTGGGCTCAAGGTTCTTGTCATGGATGACAATGGGGTTAGCAGGACAGTAACAAAGGGACTTCTTATGCATTTAGGATGCGATGTTACCACTGCAAGCTCGAGTGAAGAATGTCTTCGTGTTGTTTCTCTGGAACATGAAGTGGTCTTCATGGATGTTTGTACAGGGTTAGATGGTTATGAACTAGCAGTACGTATACATGAGAAGTTTACGAAACATCAAGATAGACCACTGATAGTTGCTCTAACTGGAAACACCAAAAGGGTAACAAAAGAGACCTGTATGAGGGTTGGAATGGATGGCCTTATATTAAAACCTATTTCTGTTGACAAAATGAGGGGTGTTTTATCAGAACTCTTAGAGCGCCGAGTTCTATTTGAAACTGTTTAA 2214 0.4056 MESCNCIDPQMAADDLLVKYQYMSDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFRIHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGFTVPIHLPVINQVFSSNRAVKISHNCPVARLRPYAGKYMPGAVVAVRVPLLHLSNFQIYDWPEVSTRNYALMVLMLPSDSARQWHVHELELVEVAVALSHAAILEESMRARDQLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETDLTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEEATFNLHSLFREVLNFIKPVASVKKLSLTSHLASDLPMYAIGDEKRLMQTILNVVGNAVKFSKEGCISITAFIAKPESFRDPRIPDFLPVPSDSHFYLRVQVKDSGSGINPQDIPKLFTKFAQNQSLATRNPAGSGLGLAICRRFVNLMEGHIWIESEGIGKGCTATFIVKLGIPDRSNELKLPFVPKVPGNHVHGRTNFAGLKVLVMDDNGVSRTVTKGLLMHLGCDVTTASSSEECLRVVSLEHEVVFMDVCTGLDGYELAVRIHEKFTKHQDRPLIVALTGNTKRVTKETCMRVGMDGLILKPISVDKMRGVLSELLERRVLFETV 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1338g00004 737 SMART HisKA_10 338 403 IPR003661 GO:0000155|GO:0007165
Vium1338g00004 737 Gene3D - 325 403 - -
Vium1338g00004 737 CDD HisKA 336 399 IPR003661 GO:0000155|GO:0007165
Vium1338g00004 737 Gene3D - 136 321 IPR029016 -
Vium1338g00004 737 PRINTS Bacterial sensor protein C-terminal signature 506 520 IPR004358 GO:0016310|GO:0016772
Vium1338g00004 737 PRINTS Bacterial sensor protein C-terminal signature 541 559 IPR004358 GO:0016310|GO:0016772
Vium1338g00004 737 PRINTS Bacterial sensor protein C-terminal signature 524 534 IPR004358 GO:0016310|GO:0016772
Vium1338g00004 737 SUPERFAMILY GAF domain-like 158 321 - -
Vium1338g00004 737 ProSiteProfiles Histidine kinase domain profile. 345 584 IPR005467 -
Vium1338g00004 737 Pfam GAF domain 158 301 IPR003018 GO:0005515
Vium1338g00004 737 Pfam His Kinase A (phospho-acceptor) domain 339 403 IPR003661 GO:0000155|GO:0007165
Vium1338g00004 737 ProSiteProfiles Response regulatory domain profile. 612 728 IPR001789 GO:0000160
Vium1338g00004 737 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 450 580 IPR003594 -
Vium1338g00004 737 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 392 580 IPR036890 -
Vium1338g00004 737 FunFam Ethylene receptor 1 403 585 - -
Vium1338g00004 737 SMART HKATPase_4 450 582 IPR003594 -
Vium1338g00004 737 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 324 404 IPR036097 GO:0000155|GO:0007165
Vium1338g00004 737 Pfam Response regulator receiver domain 613 721 IPR001789 GO:0000160
Vium1338g00004 737 SMART REC_2 611 724 IPR001789 GO:0000160
Vium1338g00004 737 Gene3D - 404 587 IPR036890 -
Vium1338g00004 737 SMART gaf_1 158 312 IPR003018 GO:0005515
Vium1338g00004 737 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 730 - -
Vium1338g00004 737 Gene3D - 605 737 - -
Vium1338g00004 737 CDD REC_ETR-like 611 724 - -
Vium1338g00004 737 FunFam Ethylene response sensor 136 308 - -
Vium1338g00004 737 SUPERFAMILY CheY-like 607 730 IPR011006 -
Vium1338g00004 737 FunFam Ethylene receptor 1 305 401 - -
Vium1338g00004 737 PIRSF Ethylen_sen_hybr_HK 1 735 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vium1338g00004 737 FunFam Ethylene receptor 605 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1338g00004 Vium-Chr1338 16151 24961 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1338g00004 1 735 Miscellaneous Gene Families AT1G66340 80.863 0.0 1215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1338g00004 GAF 4.9e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1338g00004 K14509 - gmx:100795340 1377.07