Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1338g00002 ATGGAATCCTGCAATTGTATTGACCCACAAATGGCAGCTGATGACTTATTGGTGAAATACCAATATATGTCTGATTTCTTCATTGCCCTTGCTTATTTCTCAATCCCTTTGGAGCTTATCTACTTTGTTAAGAAATCAGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCTTTCATAGTTTTATGTGGAGCAACACATCTAATTAATTTATGGACCTTTAGAATTCATTCAAGAACTGTGGCCATTGTAATGACCACTGCTAAGGTTTTAACTGCTGTGGTATCGTGTGCAACTGCCCTCATGCTTGTACATATTATTCCTGATTTATTAAGTGTTAAAACAAGGGAATTATTTTTGAAGAACAAGGCTGCCGAGCTTGATAGAGAAATGGGCCTGATTCGCACACAAGAAGAAACTGGTCGACATGTTAGGATGCTGACTCATGAGATTAGAAGCACTCTTGATAGACACACAATACTGAAAACGACTCTTGTTGAGCTGGGTAGAACTTTGGCACTAGAGGAATGTGCCTTATGGATGCCAACACGAACTGGGTTAGAGCTTCAGCTCTCTTACACACTGCGACAGCAGAACCCAGTTGGATTCACGGTACCCATTCATCTTCCTGTGATTAATCAAGTATTTAGTAGCAACAGGGCAGTAAAAATTTCGCATAATTGTCCAGTTGCTAGATTACGACCTTATGCAGGAAAATACATGCCTGGGGCAGTTGTAGCTGTTCGAGTTCCTCTCCTACATCTTTCTAATTTCCAAATATATGATTGGCCTGAGGTTTCAACTAGAAATTATGCTTTGATGGTTTTGATGCTTCCATCAGATAGCGCTAGACAATGGCATGTGCATGAGTTAGAATTGGTTGAGGTAGTTGCTGACCAGGTTAGCAATTTTCCATTTTATTCAGTAGCTGTCGCTCTTTCACATGCTGCAATCCTGGAAGAGTCAATGAGGGCAAGGGATCAACTCATGGAGCAGAATGTTGCACTGGATCTGGCAAGAAGAGAAGCAGAAACTGCAATTCGTGCTCGGAATGACTTTTTAGCTGTTATGAACCACGAGATGAGAACTCCCATGCATGCAGTTATTGCACTCTCTTCATTACTACAGGAAACAGATTTGACAGCAGAGCAACGTCTAATGGTGGAGACAATATTGAAAAGCAGTAATTTGTTGGCTACCCTCATCAATGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTCTTCAACTTGAAGAAGCAACATTTAACCTTCATTCTTTGTTCAGAGAGGTCCTTAACTTCATTAAACCTGTTGCATCTGTTAAAAAGTTATCACTCACTTCACATTTAGCTTCAGATTTGCCAATGTATGCCATTGGTGATGAAAAACGTCTCATGCAAACTATTCTGAATGTTGTTGGTAATGCTGTTAAGTTCTCAAAAGAGGGCTGCATTTCCATAACTGCTTTCATTGCAAAGCCTGAATCCTTTAGGGATCCTAGAATTCCTGACTTTCTTCCAGTGCCAAGTGATAGCCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATCAGGAATCAATCCACAGGACATCCCAAAGTTATTCACCAAGTTTGCACAAAACCAATCTTTAGCGACAAGAAATCCTGCTGGAAGTGGACTTGGCCTGGCAATTTGTAGGAGGGTTAGCAGGACAGTAACAAAGGGACTTCTTATGCATTTAGGATGCGATGTTACCACTGCAAGCTCGAGTGAAGAATGTCTTCGTGTTGTTTCTCTGGAACATGAAGTGGTCTTCATGGATGTTTGTACAGGGTTAGATGGTTATGAACTAGCAGTACGTATACATGAGAAGTTTACGAAACATCAAGATAGACCACTGATAGTTGCTCTAACTGGAAACACCAAAAGGGTAACAAAAGAGACCTGTATGAGGGTTGGAATGGATGGCCTTATATTAAAACCTATTTCTGTTGACAAAATGAGGGGTGTTTTATCAGAACTCTTAGAGCGCCGAGTTCTATTTGAAACTGTTTAA 2049 0.4056 MESCNCIDPQMAADDLLVKYQYMSDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFRIHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGFTVPIHLPVINQVFSSNRAVKISHNCPVARLRPYAGKYMPGAVVAVRVPLLHLSNFQIYDWPEVSTRNYALMVLMLPSDSARQWHVHELELVEVVADQVSNFPFYSVAVALSHAAILEESMRARDQLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETDLTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEEATFNLHSLFREVLNFIKPVASVKKLSLTSHLASDLPMYAIGDEKRLMQTILNVVGNAVKFSKEGCISITAFIAKPESFRDPRIPDFLPVPSDSHFYLRVQVKDSGSGINPQDIPKLFTKFAQNQSLATRNPAGSGLGLAICRRVSRTVTKGLLMHLGCDVTTASSSEECLRVVSLEHEVVFMDVCTGLDGYELAVRIHEKFTKHQDRPLIVALTGNTKRVTKETCMRVGMDGLILKPISVDKMRGVLSELLERRVLFETV 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1338g00002 682 SMART gaf_1 158 325 IPR003018 GO:0005515
Vium1338g00002 682 FunFam Ethylene receptor 1 416 576 - -
Vium1338g00002 682 SUPERFAMILY GAF domain-like 161 304 - -
Vium1338g00002 682 Gene3D - 136 305 IPR029016 -
Vium1338g00002 682 SMART HisKA_10 351 416 IPR003661 GO:0000155|GO:0007165
Vium1338g00002 682 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 566 - -
Vium1338g00002 682 Gene3D - 314 415 - -
Vium1338g00002 682 SMART HKATPase_4 463 601 IPR003594 -
Vium1338g00002 682 PRINTS Bacterial sensor protein C-terminal signature 554 572 IPR004358 GO:0016310|GO:0016772
Vium1338g00002 682 PRINTS Bacterial sensor protein C-terminal signature 519 533 IPR004358 GO:0016310|GO:0016772
Vium1338g00002 682 PRINTS Bacterial sensor protein C-terminal signature 537 547 IPR004358 GO:0016310|GO:0016772
Vium1338g00002 682 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 405 569 IPR036890 -
Vium1338g00002 682 Pfam His Kinase A (phospho-acceptor) domain 352 416 IPR003661 GO:0000155|GO:0007165
Vium1338g00002 682 PIRSF Ethylen_sen_hybr_HK 1 569 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vium1338g00002 682 PIRSF Ethylen_sen_hybr_HK 565 680 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vium1338g00002 682 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 337 417 IPR036097 GO:0000155|GO:0007165
Vium1338g00002 682 CDD HisKA 349 412 IPR003661 GO:0000155|GO:0007165
Vium1338g00002 682 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 463 570 IPR003594 -
Vium1338g00002 682 Gene3D - 569 682 - -
Vium1338g00002 682 Pfam GAF domain 158 304 IPR003018 GO:0005515
Vium1338g00002 682 ProSiteProfiles Response regulatory domain profile. 557 673 IPR001789 GO:0000160
Vium1338g00002 682 Gene3D - 420 568 IPR036890 -
Vium1338g00002 682 FunFam Ethylene response sensor 136 314 - -
Vium1338g00002 682 Pfam Response regulator receiver domain 567 666 IPR001789 GO:0000160
Vium1338g00002 682 FunFam Ethylene receptor 561 682 - -
Vium1338g00002 682 SMART REC_2 564 669 IPR001789 GO:0000160
Vium1338g00002 682 FunFam Ethylene receptor 1 318 414 - -
Vium1338g00002 682 SUPERFAMILY CheY-like 566 675 IPR011006 -
Vium1338g00002 682 ProSiteProfiles Histidine kinase domain profile. 358 575 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1338g00002 Vium-Chr1338 16151 24961 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1338g00002 1 680 Miscellaneous Gene Families AT1G66340 71.829 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1338g00002 GAF 5.9e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1338g00002 K14509 - gmx:100795340 1031.94