Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1338g00001 ATGGAATCCTGCAATTGTATTGACCCACAAATGGCAGCTGATGACTTATTGGTGAAATACCAATATATGTCTGATTTCTTCATTGCCCTTGCTTATTTCTCAATCCCTTTGGAGCTTATCTACTTTGTTAAGAAATCAGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCTTTCATAGTTTTATGTGGAGCAACACATCTAATTAATTTATGGACCTTTAGAATTCATTCAAGAACTGTGGCCATTGTAATGACCACTGCTAAGGTTTTAACTGCTGTGGTATCGTGTGCAACTGCCCTCATGCTTGTACATATTATTCCTGATTTATTAAGTGTTAAAACAAGGGAATTATTTTTGAAGAACAAGGCTGCCGAGCTTGATAGAGAAATGGGCCTGATTCGCACACAAGAAGAAACTGGTCGACATGTTAGGATGCTGACTCATGAGATTAGAAGCACTCTTGATAGACACACAATACTGAAAACGACTCTTGTTGAGCTGGGTAGAACTTTGGCACTAGAGGAATGTGCCTTATGGATGCCAACACGAACTGGGTTAGAGCTTCAGCTCTCTTACACACTGCGACAGCAGAACCCAGTTGGATTCACGGTACCCATTCATCTTCCTGTGATTAATCAAGTATTTAGTAGCAACAGGGCAGTAAAAATTTCGCATAATTGTCCAGTTGCTAGATTACGACCTTATGCAGGAAAATACATGCCTGGGGCAGTTGTAGCTGTTCGAGTTCCTCTCCTACATCTTTCTAATTTCCAAATATATGATTGGCCTGAGGTTTCAACTAGAAATTATGCTTTGATGGTTTTGATGCTTCCATCAGATAGCGCTAGACAATGGCATGTGCATGAGTTAGAATTGGTTGAGGTAGTTGCTGACCAGGTTAGCAATTTTCCATTTTATTCAGTAGCTGTCGCTCTTTCACATGCTGCAATCCTGGAAGAGTCAATGAGGGCAAGGGATCAACTCATGGAGCAGAATGTTGCACTGGATCTGGCAAGAAGAGAAGCAGAAACTGCAATTCGTGCTCGGAATGACTTTTTAGCTGTTATGAACCACGAGATGAGAACTCCCATGCATGCAGTTATTGCACTCTCTTCATTACTACAGGAAACAGATTTGACAGCAGAGCAACGTCTAATGGTGGAGACAATATTGAAAAGCAGTAATTTGTTGGCTACCCTCATCAATGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTCTTCAACTTGAAGAAGCAACATTTAACCTTCATTCTTTGTTCAGAGAGGTCCTTAACTTCATTAAACCTGTTGCATCTGTTAAAAAGTTATCACTCACTTCACATTTAGCTTCAGATTTGCCAATGTATGCCATTGGTGATGAAAAACGTCTCATGCAAACTATTCTGAATGTTGTTGGTAATGCTGTTAAGTTCTCAAAAGAGGGCTGCATTTCCATAACTGCTTTCATTGCAAAGCCTGAATCCTTTAGGGATCCTAGAATTCCTGACTTTCTTCCAGTGCCAAGTGATAGCCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATCAGGAATCAATCCACAGGACATCCCAAAGTTATTCACCAAGTTTGCACAAAACCAATCTTTAGCGACAAGAAATCCTGCTGGAAGTGGACTTGGCCTGGCAATTTGTAGGAGGTTTGTAAATCTTATGGAAGGGCATATTTGGATTGAAAGTGAAGGTATTGGTAAAGGATGTACAGCCACGTTTATTGTAAAACTTGGAATCCCAGACCGATCAAATGAACTTAAGCTACCTTTTGTACCTAAAGTTCCGGGAAATCATGTTCATGGACGTACAAACTTTGCTGGGCTCAAGGTTCTTGTCATGGATGACAATGGGGTTAGCAGGACAGTAACAAAGGGACTTCTTATGCATTTAGGATGCGATGTTACCACTGCAAGCTCGAGTGAAGAATGTCTTCGTGTTGTTTCTCTGGAACATGAAGTGGTCTTCATGGATGTTTGTACAGGGTTAGATGGTTATGAACTAGCAGTACGTATACATGAGAAGTTTACGAAACATCAAGATAGACCACTGATAGTTGCTCTAACTGGAAACACCAAAAGGGTAACAAAAGAGACCTGTATGAGGGTTGGAATGGATGGCCTTATATTAAAACCTATTTCTGTTGACAAAATGAGGGGTGTTTTATCAGAACTCTTAGAGCGCCGAGTTCTATTTGAAACTGTTTAA 2253 0.4048 MESCNCIDPQMAADDLLVKYQYMSDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFRIHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGFTVPIHLPVINQVFSSNRAVKISHNCPVARLRPYAGKYMPGAVVAVRVPLLHLSNFQIYDWPEVSTRNYALMVLMLPSDSARQWHVHELELVEVVADQVSNFPFYSVAVALSHAAILEESMRARDQLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETDLTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEEATFNLHSLFREVLNFIKPVASVKKLSLTSHLASDLPMYAIGDEKRLMQTILNVVGNAVKFSKEGCISITAFIAKPESFRDPRIPDFLPVPSDSHFYLRVQVKDSGSGINPQDIPKLFTKFAQNQSLATRNPAGSGLGLAICRRFVNLMEGHIWIESEGIGKGCTATFIVKLGIPDRSNELKLPFVPKVPGNHVHGRTNFAGLKVLVMDDNGVSRTVTKGLLMHLGCDVTTASSSEECLRVVSLEHEVVFMDVCTGLDGYELAVRIHEKFTKHQDRPLIVALTGNTKRVTKETCMRVGMDGLILKPISVDKMRGVLSELLERRVLFETV 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1338g00001 750 SMART gaf_1 158 325 IPR003018 GO:0005515
Vium1338g00001 750 ProSiteProfiles Histidine kinase domain profile. 358 597 IPR005467 -
Vium1338g00001 750 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 743 - -
Vium1338g00001 750 Pfam His Kinase A (phospho-acceptor) domain 352 416 IPR003661 GO:0000155|GO:0007165
Vium1338g00001 750 SMART HisKA_10 351 416 IPR003661 GO:0000155|GO:0007165
Vium1338g00001 750 SUPERFAMILY CheY-like 620 743 IPR011006 -
Vium1338g00001 750 FunFam Ethylene receptor 1 416 598 - -
Vium1338g00001 750 FunFam Ethylene response sensor 136 314 - -
Vium1338g00001 750 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 463 593 IPR003594 -
Vium1338g00001 750 PIRSF Ethylen_sen_hybr_HK 1 748 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vium1338g00001 750 Pfam Response regulator receiver domain 626 734 IPR001789 GO:0000160
Vium1338g00001 750 Gene3D - 314 415 - -
Vium1338g00001 750 CDD REC_ETR-like 624 737 - -
Vium1338g00001 750 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 405 593 IPR036890 -
Vium1338g00001 750 Gene3D - 416 600 IPR036890 -
Vium1338g00001 750 CDD HisKA 349 412 IPR003661 GO:0000155|GO:0007165
Vium1338g00001 750 FunFam Ethylene receptor 618 750 - -
Vium1338g00001 750 SMART REC_2 624 737 IPR001789 GO:0000160
Vium1338g00001 750 PRINTS Bacterial sensor protein C-terminal signature 519 533 IPR004358 GO:0016310|GO:0016772
Vium1338g00001 750 PRINTS Bacterial sensor protein C-terminal signature 554 572 IPR004358 GO:0016310|GO:0016772
Vium1338g00001 750 PRINTS Bacterial sensor protein C-terminal signature 537 547 IPR004358 GO:0016310|GO:0016772
Vium1338g00001 750 Pfam GAF domain 158 304 IPR003018 GO:0005515
Vium1338g00001 750 Gene3D - 136 305 IPR029016 -
Vium1338g00001 750 SMART HKATPase_4 463 595 IPR003594 -
Vium1338g00001 750 SUPERFAMILY GAF domain-like 161 304 - -
Vium1338g00001 750 Gene3D - 618 750 - -
Vium1338g00001 750 FunFam Ethylene receptor 1 318 414 - -
Vium1338g00001 750 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 337 417 IPR036097 GO:0000155|GO:0007165
Vium1338g00001 750 ProSiteProfiles Response regulatory domain profile. 625 741 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1338g00001 Vium-Chr1338 16151 24961 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1338g00001 1 748 Miscellaneous Gene Families AT1G66340 80.667 0.0 1225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1338g00001 GAF 6.9e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1338g00001 K14509 - gmx:100795340 1380.54