Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13368g00002 ATGGGTAGATCTCCTTGTTGTGAGAAGGAACACACAAACAAAGGAGCTTGGACCAAAGAGGAAGACGAACGCCTCATCAACTACATCAAACTCCATGGCGAAGGTTGTTGGAGATCCCTCCCCAAAGCTGCCGGCTTGCTCAGATGTGGCAAGAGTTGCAGACTCAGATGGATTAATTACCTCAGACCTGATCTTAAGAGAGGCAACTTCACTGAAGACGAAGACGAACTCATCATTAACCTCCATAGCTTACTTGGAAACAAATGGTCTCTGATTGCCGCCAGGTTACCGGGCAGAACCGATAACGAAATCAAAAACTATTGGAACACTCACATCAAGCGCAAACTCTACAGCCGCGGAATCGACCCGCAAACCCATCGACCGATCAACGCCGCCTCCACCCCTCCGCCAACCGCAGCGGTTTCGCCTCCCTCCACCGCCGCTGTCCCTGTGGCAACGTCATCGTCCAACAAAAAAATACACAGCGACAGCATTAACAGCTCCAACACCCTCGCCCATGATGTTGTTATTAATAACAACATCAACGGTAACAACAGCAACGGTTTTCATTTGGTGAGCCATACTGGCTATGCCAACGCCATAACGAAGGTTGGAACCGACGAAGATTCTAACAGCAGCAGCGGCGTTACCGTGGAAGAATCCCTCCCTCACCATCAAATCAACTTGGACCTTTCCATTGGCCTTCCCTCTTCTCGGCAAGTTTCTTCTTCGGTGAACCCAGAAAAGTTGAAAGCGCAAGAGCATGATCAAAAACCGCATGTGTTGTACAATTGGTATGGGAACATTACTGGCCAGAGTGTTTGTCTTTGTTACAGTCTAGGGCTTCAAAGCGACCAAGCTTGTTATTGCAAAGGCATGGGTGCTACTGCTACTGCTACAACGGTTACTACAACTGCCACAGACAGTAATCTATATAGATTTTACAGACCCATGAATATTTAG 963 0.4808 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEDEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPINAASTPPPTAAVSPPSTAAVPVATSSSNKKIHSDSINSSNTLAHDVVINNNINGNNSNGFHLVSHTGYANAITKVGTDEDSNSSSGVTVEESLPHHQINLDLSIGLPSSRQVSSSVNPEKLKAQEHDQKPHVLYNWYGNITGQSVCLCYSLGLQSDQACYCKGMGATATATTVTTTATDSNLYRFYRPMNI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13368g00002 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium13368g00002 320 CDD SANT 69 112 IPR001005 -
Vium13368g00002 320 CDD SANT 16 61 IPR001005 -
Vium13368g00002 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium13368g00002 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium13368g00002 320 FunFam Myb transcription factor 68 136 - -
Vium13368g00002 320 Gene3D - 68 134 - -
Vium13368g00002 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium13368g00002 320 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium13368g00002 320 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Vium13368g00002 320 MobiDBLite consensus disorder prediction 126 150 - -
Vium13368g00002 320 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 203 - -
Vium13368g00002 320 Gene3D - 14 66 - -
Vium13368g00002 320 FunFam MYB-related transcription factor 13 66 - -
Vium13368g00002 320 SMART sant 13 63 IPR001005 -
Vium13368g00002 320 SMART sant 66 114 IPR001005 -
Vium13368g00002 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13368g00002 Vium-Chr13368 48072 49616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13368g00002 1 277 MYB Transcription Factor Family AT4G38620 54.317 8.94e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium13368g00002 Myb_DNA-binding 4.8e-15 CL0123