Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13368g00001 ATGGACAAGGCACGATTCGGGTTTTTCTTCATGTTGCTCATTATCCTTGCTTCTGAGATGATGGTTCAAACGGAGGGAAGACACTGTGAGTCAAAGAGCCATCGATTTAAGGGGATGTGCGTCAGCCACCAAAACTGTGCTTCGGTTTGCCATGTTGAAGGCTTCACTGGTGGCCACTGTCGCGGATTTCGTAGACGCTGCTTCTGCACCAGGCACTGTTAG 222 0.5 MDKARFGFFFMLLIILASEMMVQTEGRHCESKSHRFKGMCVSHQNCASVCHVEGFTGGHCRGFRRRCFCTRHC 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13368g00001 73 SMART gth_4 28 73 IPR003614 GO:0006952
Vium13368g00001 73 ProSitePatterns Gamma-thionins family signature. 27 50 IPR008176 GO:0006952
Vium13368g00001 73 Pfam Gamma-thionin family 27 73 - -
Vium13368g00001 73 CDD Knot1 40 70 IPR003614 GO:0006952
Vium13368g00001 73 PRINTS Purothionin signature 28 43 IPR008176 GO:0006952
Vium13368g00001 73 PRINTS Purothionin signature 58 72 IPR008176 GO:0006952
Vium13368g00001 73 PANTHER DEFENSIN-LIKE PROTEIN 1 7 70 - -
Vium13368g00001 73 Gene3D - 27 73 IPR036574 -
Vium13368g00001 73 SUPERFAMILY Scorpion toxin-like 27 73 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13368g00001 Vium-Chr13368 33554 34064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13368g00001 7 73 Plant Defensins Gene Families AT2G02100 64.706 2.37e-26 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13368g00001 - - pvu:PHAVU_009G158100g 105.531