Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1333g00003 ATGAGGACCCGTTTAGTCTCCACGCGGGTCATCATCGTGGCCTCTCTTTGTTTCCTAGCAAGCATGAAATTGGAAGCCAAAACCGTCGACCCCTACAAGGTTCTTGGGGTCGATAAGAATGCAAGTCAGCGGGAAATTCAGAAGGCTTTCCACAAGTTGTCTCTCCAGTATCACCCTGACAAGAACAAAGCCAAGAGTGCGCAAGAGAAGTTTGCTCAGATCAATAATGCCTATGACATTTTATCTGATGAAGAGAAGAGAAAGAATTATGACATGTATGGAGATGTAAATGGTAATCCTGGATTTCCTGGTGGCCATCCTGGATTTCAAGGTGGCCATCCTGGATTTCAAGGTGGTCATCCCGGAGGTCGTGGTGGATATACTTACTTTACAGAGGGTGGTCCTGGACAAAGCCATTTTAACTTCAAATCAGGGGGAGATTGGCAAGGAGGATCTAAGTCATTCTCCTTTTCCTCTGGTGGCTCGGGTGGTTCCAATTCTTTTGGGTTTGGCTTGGATGATATTTTTGGCAGTATTTTTGGTGGTGGAGGTGCTGGGAGTCAGTTTGGTGGTTTTGGCAGTTCAGCTAATACTGAAGGGACGTCCACAGCTTCTCCCCAACGTCTCACATCTATAAATTCACGTATCTACAAGAAAGAGATAGAAAATGCAGGGATGACTTGGATTTTGTTGTCTTATAGACCTAAAAGTGCATCGAAGAATATCCAATACTTTGAGTCCACTGTAGAGGAGGTTGCCAGTACATTACAGGGAGCTGTGAAGGTTGGAAGCATTAACTGTGATAAGGAAGTCTCGTTGTGTAAAGAGCTTGGCATGTATCCACAAAATGCTCCTAGAATTTTTGTTTTTTCTTACAAGGAGAATGAAATAGGTTCTTTAGTGGAGTACAGTGGACACTTGGCTGCTAAGAATTTGAAGGCTTTCGTTCAAGAACACTTGCCAAGGTTTTCCAAGCGAACCAACTTGAATAATCTGGACCAATTTAGCACTACGGCAAAGTTGCCTAGGGTGCTGCTTCTCTCCACCAAGAAGGACACTCCAGTAATTTGGCGTGTTCTTAGTGGCTTGTTTCACAAACGCATTATTTTCAGTGATGCACAGGTGGACGATGTTTCTGATCTAAGAATAAAAAGTCTAGGAGTTGATGCACTTCCATCAATTGTTGGTTGGCTACCTAATGGAGAGAAACGTGTTCTGAAAACTGGGATTTCTGTAAAAGATTTAAAATCTGCAGTTCTCGATCTTAGTAAAATACTTGATAGTTTTGTAGAGGCAAGTAAAAAGGAAGCATCAGCTCAGGCCAAGAAGGCAAAAACTGATCCAGACGACGGACGCATACCATTGCTTTCTCAATCCAACTTTGAGGCTCTCTGTGGTGCTAAAGCTCCTGTCTGCATAATTGGCGCCTTCAGATCTTCTAAAGCCAGAGAAAAGCTAGAATCAATCCTCTCTTTGGTCTCTAAAAAATCTTTGTCAAGAAGACCAAATGGTGGGAGCAGCAGCTCTAGGGACTCCATTTCTTATGCTTTATTAGATGCTGCAAAGCATCAGTCATTTCTAAAGGCATTTGACAAAACAGGTTATAAATCATCAGATAAGTTGTTGATTGCTTACAAACCTCGTAGAGGAAAGTACAGTGTATTTAGGGATGAAATGACAATAGAGGAGGTAGAGAATTTCGTTGCCTCCGTTCTCAGTGGAGATATACCCTTCAGAGAAACGAGTGGGAAGGCTGTACTAGAGCATTAG 1770 0.4282 MRTRLVSTRVIIVASLCFLASMKLEAKTVDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKAKSAQEKFAQINNAYDILSDEEKRKNYDMYGDVNGNPGFPGGHPGFQGGHPGFQGGHPGGRGGYTYFTEGGPGQSHFNFKSGGDWQGGSKSFSFSSGGSGGSNSFGFGLDDIFGSIFGGGGAGSQFGGFGSSANTEGTSTASPQRLTSINSRIYKKEIENAGMTWILLSYRPKSASKNIQYFESTVEEVASTLQGAVKVGSINCDKEVSLCKELGMYPQNAPRIFVFSYKENEIGSLVEYSGHLAAKNLKAFVQEHLPRFSKRTNLNNLDQFSTTAKLPRVLLLSTKKDTPVIWRVLSGLFHKRIIFSDAQVDDVSDLRIKSLGVDALPSIVGWLPNGEKRVLKTGISVKDLKSAVLDLSKILDSFVEASKKEASAQAKKAKTDPDDGRIPLLSQSNFEALCGAKAPVCIIGAFRSSKAREKLESILSLVSKKSLSRRPNGGSSSSRDSISYALLDAAKHQSFLKAFDKTGYKSSDKLLIAYKPRRGKYSVFRDEMTIEEVENFVASVLSGDIPFRETSGKAVLEH 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1333g00003 589 SUPERFAMILY Chaperone J-domain 26 129 IPR036869 -
Vium1333g00003 589 Gene3D Glutaredoxin 453 579 - -
Vium1333g00003 589 Gene3D DnaJ domain 27 190 IPR036869 -
Vium1333g00003 589 CDD PDI_a_family 245 316 - -
Vium1333g00003 589 Pfam DnaJ domain 30 91 IPR001623 -
Vium1333g00003 589 ProSiteProfiles dnaJ domain profile. 30 94 IPR001623 -
Vium1333g00003 589 Coils Coil 64 84 - -
Vium1333g00003 589 PRINTS DnaJ domain signature 66 86 IPR001623 -
Vium1333g00003 589 PRINTS DnaJ domain signature 32 50 IPR001623 -
Vium1333g00003 589 PRINTS DnaJ domain signature 86 105 IPR001623 -
Vium1333g00003 589 PRINTS DnaJ domain signature 50 65 IPR001623 -
Vium1333g00003 589 PANTHER DNAJ PROTEIN ERDJ3A 1 588 - -
Vium1333g00003 589 Gene3D Glutaredoxin 210 321 - -
Vium1333g00003 589 MobiDBLite consensus disorder prediction 101 131 - -
Vium1333g00003 589 ProSitePatterns Nt-dnaJ domain signature. 71 90 IPR018253 -
Vium1333g00003 589 SUPERFAMILY Thioredoxin-like 207 321 IPR036249 -
Vium1333g00003 589 CDD DnaJ 30 83 IPR001623 -
Vium1333g00003 589 SMART dnaj_3 29 86 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1333g00003 Vium-Chr1333 57162 60518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1333g00003 32 93 C2H2 Transcription Factor Family AT1G74250 39.706 7.84e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1333g00003 - - gmx:100796871 785.793