Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1330g00014 ATGTTCCTCTCCAACTCCATCAACCATGTTACCTTTCTTCTGTTCCTGTCTCTCTTCGTAATCGAACCGTTTTGTTCCTCTGCAGCTCCGGTTTACAATTACTGCCCAACCAACGCATCCTACAATTCCACCGCAACATTTGAAACCAATCTCAAATTCCTCCTCGAATCTCTCGTCTCCAACATTTCCCAATCCGACGGCTCCTATTTCACCGCCATGGGCTTGGGGACCACAAGTGCCGCCAGCGGCTATTTCCTCTGCCGCGGCGATGTCTCCCTCGCCACGTGTAACGACTGCATAACCACCGCCGCCACCGAAATAACACAACTCTGCCCCAACAAAACAGAGTCCATAATATGGTACGACGAGTGCACGCTCCGTTTCACCAACACCTACTTCGACCCCGCCAGCATCGAACCGGGAGCTAGCTTATGGAACGGTGAAAACATCTCCACCTCCGACCTGGGCAGCTTTAACGGAACGTTGTTCGGCTTGTTGGACGATTTGGTGGAAGAAACAGCGAATTCTAACTCGGCGAGGAAATTCGCCACCGGCGATAGAGAATTCGCCGAATCCTCGGCTCAGAGAAGGGTGTACGCCCTGACGGAGTGCGAGCCGAGCTTAACGAGTAGTAGTTGTGAAGAGTGTTTGCAAAACGCCATTTCTACTGTACCCTCATGCTGCGAAGGAAAAGAGGGCGCGAGGGCTCTGCTTGCGTGGTGCAATGTTAGATACGAATTGTTTCAGTTTTACAATACGAACGCCACGTCACCACCCTCATCAGGAAATAACCATTATGCATTACGAGTAATCCTCATTGTTTCCCTTGTTATTGTGTCGATAATTCTCCTATGTGGTGTCTGCTATTTCATATTCAAAAGATCAAGGAAGAAATACAACACTCTTCTAAGGGAAAATTTTGGAGAAGAAAGTTCCACTTTGGAATCGTTACATTTTGATTTGGCCACAATAGAAGTTGCCACAAAGAAGTTTTCACATGAAAACAGGATAGGTGAAGGTGGATTTGGAGATGTTTATAAGGGTATCCTTCAAGATGGACGAGAAATAGCAGTTAAAAAACTTTCACATAGTTCAGGCCAAGGTGCAGCTGAATTTAAGAATGAGATTTTGTTAATAGCAAAACTTCAACACAAAAATTTAGTGACGTTGTTAGGATTTTGTTTGGAAGCTGAAGAAAAGATGCTTATTTATGAATTTGTGCCTAATAAAAGCCTAGACTACTTTCTATTTGATCCATACAAAAGTAGTCAAATGAATTGGTCGGAACGATACAAAATTATTCAAGGAATTACACAAGGAATTTTATATTTACATGAACATTCCCGATTGAAAGTAATACATCGTGATCTCAAACCTAGCAATATATTATTTGATGTGAACATGAATGTAAAGATATCAGATTTTGGAATGGCAAGAATTGTTGGTGTAGATCAATATCAAAGAAACACAAATAGAATAGTGGGAACATATGGATATATGTCACCTGAATATGCAATGTATGGACAATTTTCAGAAAAATCAGATGTTTTCAGTTTTGGAGTTATAATAATAGAAATAGTTAGTGCAAAAAAGAATGCGAGACATGTTTTTTCAGATGATGATGACCTTTTGAGCTATGCTTGGGATCAATGGAGGGATCGGACACCATTAAACATATTAGACAAAAATATTAAGGAATCTTGCAATCAGAGTGAAGTCATAAAATGCATCCAAATAGGTTTATTATGCGTGCAAGAGAAGCCACAGGACAGACCTACAATGACACAAGTTGTTTCATATCTCGGTAGCTCTTTATCTGAGTTGCCATTTCCTGAAAAACCCATAAATTCTAATCAAAGTGGACTAGTTCAAAGGATGGTAGTAGGAGGATCCAGTTCAGGTTCTACAAAATCGATAAATGAAATGTCTGTGAGCATATTTATTCCTCGGTAG 1953 0.4117 MFLSNSINHVTFLLFLSLFVIEPFCSSAAPVYNYCPTNASYNSTATFETNLKFLLESLVSNISQSDGSYFTAMGLGTTSAASGYFLCRGDVSLATCNDCITTAATEITQLCPNKTESIIWYDECTLRFTNTYFDPASIEPGASLWNGENISTSDLGSFNGTLFGLLDDLVEETANSNSARKFATGDREFAESSAQRRVYALTECEPSLTSSSCEECLQNAISTVPSCCEGKEGARALLAWCNVRYELFQFYNTNATSPPSSGNNHYALRVILIVSLVIVSIILLCGVCYFIFKRSRKKYNTLLRENFGEESSTLESLHFDLATIEVATKKFSHENRIGEGGFGDVYKGILQDGREIAVKKLSHSSGQGAAEFKNEILLIAKLQHKNLVTLLGFCLEAEEKMLIYEFVPNKSLDYFLFDPYKSSQMNWSERYKIIQGITQGILYLHEHSRLKVIHRDLKPSNILFDVNMNVKISDFGMARIVGVDQYQRNTNRIVGTYGYMSPEYAMYGQFSEKSDVFSFGVIIIEIVSAKKNARHVFSDDDDLLSYAWDQWRDRTPLNILDKNIKESCNQSEVIKCIQIGLLCVQEKPQDRPTMTQVVSYLGSSLSELPFPEKPINSNQSGLVQRMVVGGSSSGSTKSINEMSVSIFIPR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1330g00014 650 ProSiteProfiles Gnk2-homologous domain profile. 138 250 IPR002902 -
Vium1330g00014 650 SUPERFAMILY Protein kinase-like (PK-like) 313 614 IPR011009 -
Vium1330g00014 650 CDD STKc_IRAK 337 601 - -
Vium1330g00014 650 ProSiteProfiles Protein kinase domain profile. 331 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00014 650 Pfam Protein tyrosine and serine/threonine kinase 334 601 IPR001245 GO:0004672|GO:0006468
Vium1330g00014 650 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 293 406 - -
Vium1330g00014 650 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Vium1330g00014 650 Gene3D Transferase(Phosphotransferase) domain 1 407 610 - -
Vium1330g00014 650 Gene3D Phosphorylase Kinase; domain 1 293 406 - -
Vium1330g00014 650 Gene3D - 141 250 IPR038408 -
Vium1330g00014 650 Gene3D - 27 133 IPR038408 -
Vium1330g00014 650 FunFam cysteine-rich receptor-like protein kinase 10 407 608 - -
Vium1330g00014 650 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Vium1330g00014 650 SMART serkin_6 331 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00014 650 Pfam Salt stress response/antifungal 156 246 IPR002902 -
Vium1330g00014 650 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Vium1330g00014 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Vium1330g00014 650 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1330g00014 Vium-Chr1330 81043 84820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1330g00014 12 650 Receptor kinase-like Gene Family AT4G05200 42.563 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1330g00014 PK_Tyr_Ser-Thr 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1330g00014 - - var:108324781 1266.14