Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1330g00013 ATGTTTTGGCGTAACATGTTCCTCTCCACCACCACCAACCATGTTACCTTTCTTCTGTTCCTGTCTCTGTTCGTAATCGAACCGTTTTGTTCCTCTGCAGCTCCGGTTTACAATTACTGCCCAACCAACGCAACCTACAATTCCACCGCAACATTCGAAAACAATCTTAAATTCCTCCTCCAATCTCTTGTCTCCAACGCTTCCGAATCCGACGGCTCCTATTCCACCTTCATGGGCTTGGGGTCCGCAAACGTCGCCAGCGGCTCTTTACTCTGCCGCGGCGACGTCTCCCTCGCCACGTGTAACGACTGCATAACCACCGCCGCCACCGAAATAACACAACTCTGCCCCAATAAAACAGAGTCCATAATATGGTACGACGAGTGCATGATCCGTTTCACCAACACCTACTTCAGCCCCACCAGCATCGAACCGGGAGCCAGCTTGTCGAACGATGAAAACATCTCCGCCTCGGACTTGGTCAGCTTTAACAGCACGTTGTTCGGCTTGTTGGACGATTTGGTGGAAGAGACTGCGAGTTCTAACTCGGCGAGGAAATTCGCCACTGGCGATAGAGAATTCGCCGGATCCTCGCCTCAGAGACGGGTGTACGCTCTAACGGAGTGTGATCCGGAATTAACGAATAGTGTGTGTGAAGAGTGTTTGCAAAACGCCATTTCAACTCTTCCGTCGTGCTGCGAAGGAAAACAGGGCGCGAGGGCTCTGCTTGCACTGTGCAATGTTAGATACGAATTGTTTCGGTTTTACAATGAGAGCGCCACGTCAGCACCTTCATCAGGAAATAACAATTATATAATTCGAGTAATCTTAATCGTTGCCCTGGTTATTGTGTCGATAATTCTCTTATGCGGTGTCTGCTATTTCATATTGAAAAGATCAAAGAGGAGATACAACACTCTTCTAAGGGAAAATTTTGGAGAAGAAAGTTCCACTTTGGAATCGTTACAATTTGATTTGGCCACAGTGGAAGTTGCCACAAAGAAGTTTTCACATGAAAACAGGATAGGTGAAGGTGGATTTGGAGATGTTTATAAGGGTATCCTTCCCGATGGACGACAAATAGCAGTTAAAAAACTTTCACATAGTTCAGGCCAAGGGGCAGCAGAATTCAAGAATGAGATTTTGTTAATAGCAAAACTTCAACATAAAAATTTAGTGACATTATTAGGATTTTGTTTGGAAGCTGAAGAAAAGATGCTTATCTATGAATTTGTGCCTAATAAAAGCCTGGACTACCTTCTCTTTGAACCATACAAAAGTAATCATATGAACTGGTCAGACCGTTACAGAATTATACAAGGAATTACACAGGGAATTTTATATCTACATGAACATTCACGATTAAAAGTTATACACCGTGATCTTAAACCCAGTAATATATTATTAGATAATGATATGAATCCAAAGATTTCAGATTTTGGATTAGCAAGAATGGTTGCTGTAGATCAATATCAGAGAGAAACAAAGAGAATCGTGGGAACATATGGATATATGTCACCAGAATATGCAATGCATGGACAATTCTCAGAAAAATCAGATGTTTTCAGTTTTGGAGTTATAATATTAGAAATAGTAAGTGCGAAAAAAAATGCACGAGAAGTTTTCCAAGACGATGATGACCTCTTGAGCTATGCTTGGGATCAATGGAGGGATCGGACACCATTAAACATATTAGACAAAAATATTAAGGAATCTTGCAATCACAGTGAAGTCATAAAATGCATTCAAATAGGTTTATTATGTGTACAAGAGAAGCCTCATGACAGACCTACAATGACACAAGTTGTTTCATATCTCAGTAGCTCTTTATCTGAGTTGCCATTTCCTGAAAAACCCATAAACTCTAATCAAAGTGGACTAGTTCAAAAGATGTTAGTAGGAGGATCCAGTTCAGGTTCTGCGCAAACAATAAATGAAATGTCTGTGAGCATATTTATCCCTCGGTAG 1968 0.4157 MFWRNMFLSTTTNHVTFLLFLSLFVIEPFCSSAAPVYNYCPTNATYNSTATFENNLKFLLQSLVSNASESDGSYSTFMGLGSANVASGSLLCRGDVSLATCNDCITTAATEITQLCPNKTESIIWYDECMIRFTNTYFSPTSIEPGASLSNDENISASDLVSFNSTLFGLLDDLVEETASSNSARKFATGDREFAGSSPQRRVYALTECDPELTNSVCEECLQNAISTLPSCCEGKQGARALLALCNVRYELFRFYNESATSAPSSGNNNYIIRVILIVALVIVSIILLCGVCYFILKRSKRRYNTLLRENFGEESSTLESLQFDLATVEVATKKFSHENRIGEGGFGDVYKGILPDGRQIAVKKLSHSSGQGAAEFKNEILLIAKLQHKNLVTLLGFCLEAEEKMLIYEFVPNKSLDYLLFEPYKSNHMNWSDRYRIIQGITQGILYLHEHSRLKVIHRDLKPSNILLDNDMNPKISDFGLARMVAVDQYQRETKRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIILEIVSAKKNAREVFQDDDDLLSYAWDQWRDRTPLNILDKNIKESCNHSEVIKCIQIGLLCVQEKPHDRPTMTQVVSYLSSSLSELPFPEKPINSNQSGLVQKMLVGGSSSGSAQTINEMSVSIFIPR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1330g00013 655 SMART serkin_6 336 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00013 655 Gene3D Phosphorylase Kinase; domain 1 299 411 - -
Vium1330g00013 655 Gene3D Transferase(Phosphotransferase) domain 1 412 617 - -
Vium1330g00013 655 Gene3D - 32 138 IPR038408 -
Vium1330g00013 655 Gene3D - 147 255 IPR038408 -
Vium1330g00013 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Vium1330g00013 655 FunFam cysteine-rich receptor-like protein kinase 10 412 613 - -
Vium1330g00013 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 42 649 - -
Vium1330g00013 655 ProSiteProfiles Protein kinase domain profile. 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00013 655 ProSiteProfiles Gnk2-homologous domain profile. 143 255 IPR002902 -
Vium1330g00013 655 CDD STKc_IRAK 342 603 - -
Vium1330g00013 655 ProSiteProfiles Gnk2-homologous domain profile. 34 138 IPR002902 -
Vium1330g00013 655 Pfam Protein tyrosine and serine/threonine kinase 339 606 IPR001245 GO:0004672|GO:0006468
Vium1330g00013 655 SUPERFAMILY Protein kinase-like (PK-like) 319 620 IPR011009 -
Vium1330g00013 655 ProSitePatterns Protein kinases ATP-binding region signature. 342 365 IPR017441 GO:0005524
Vium1330g00013 655 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 298 411 - -
Vium1330g00013 655 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Vium1330g00013 655 Pfam Salt stress response/antifungal 161 251 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1330g00013 Vium-Chr1330 58918 71120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1330g00013 17 655 Receptor kinase-like Gene Family AT4G05200 42.336 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1330g00013 PK_Tyr_Ser-Thr 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1330g00013 - - var:108324781 1140.18