LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1330g00012	ATGCTAGCCTCCAACTTCTGTACAACCTCGTTAACACTTCAATTACTATGTCTGTTATGCATGCTTTTTCTTGCATCTGCATCAGCAGCCATTTACAGTGCCCACTACTGCAGCAATGAAACCTTTTACTCACCCAACACCAAATTTCAATCCAACTTGAATACCCTTCTCTCTTCTCTTGTTTCAAACTCCTCCCTTCCCTCCAACAGCGGTTTCCTCCGAACCTCCGTCGACGACATTGACGGCCGTTTCCTCTGCCGCGGCGACGTCAACCCGACCGTCTGCCATGGCTGCGTCGCCGCAGCAGCAGCCAACATAACTCGCCTCTGTCCCAACGATACCGAGTCCTACATCTGGTACGACGAGTGTACGCTAATCTACTCCAACAGCACCTTCGACAATGATGACATAGTTCCCGGGTATCCCCTCAACGACGAAGGAAGCACCGTTAACTCAAATCAGGACCACTTCAACCAATTACTGTCGAACTTGTTAAACAGTTTGGAGGGAAAAGCTTTGGCGAGTTCCATGGGAGAGAAGAAGTTCGCCGCAGGTGCGGTGAGTGTGACGACCGCGCAAACGCTGTATGGAATGGCGCAGTGCGAGCCAGACTCAACGAGTGGTCGCTGTGAGGCGTGCTTTCGAAGCGCAATTGCAGCTATTCCATCGTGTTGCAACGGAAGCGGAGGAGCAAGGCTTCTGCTTCCCATCTGTAGCATCAGATACCAACTGCATCCTTTTCTGTACAATTCCACCATGCTCATTCCTTCTTCAGGTAGCAAAAGTACATTGATGATCGTGGCAATTGTTCTCCCGATTGCTATTTTGGCGCTGTTCTTGTTCATAGGATGCTGTTGGTGGCGAAGAAGGCAAAGAGAAAACCGTGAGGATGTCCAGGACGTGAATGATAGCCTTAGGAGATATTTGACTGAGGAAGAGTCTTTGCATTTTGACTTGGCTACAATAGAAGCAGCCACAGATAGTTTCTCAGATGAGATGAAGATAGGAGAAGGTGGATTTGGGGCGGTTTATAAGGGTACCTTTCCTAATGGAGAAGAGATAGCTGTGAAGAGGCTATCAAGAACCTCCCTCCAAGGTGACAGAGAATTCAAGAACGAGGTTCTACTTATTGCTCAGCTTCAACACAAAAACTTAGTTAGACTGTTAGGCTTTTGTATGGAGAGAACGGAGAGGATACTGGTTTACGAGTTTATCCAAAATTCCAGCCTCGACCACTATCTATTTGGTCACGAAGACCATGGAGTTCTAGACTGGGCAAGACGTTACAAAATTATAGTTGGGATTGTACGTGGAGTTCAATATCTCCATGAAGATTCTCGGCTAAAAGTAATACACCGCGATCTCAAGGCATCTAATGTTTTACTAGATGCCGATATGAATCCAAAGATTTCCGACTTTGGAATGGCAAAGGTTTTCCATGGAGATCAAAGTCAAGAAAATACAAGAACAGGAAGGGTAGTTGGAACTTTGTAA	1494	0.4665	MLASNFCTTSLTLQLLCLLCMLFLASASAAIYSAHYCSNETFYSPNTKFQSNLNTLLSSLVSNSSLPSNSGFLRTSVDDIDGRFLCRGDVNPTVCHGCVAAAAANITRLCPNDTESYIWYDECTLIYSNSTFDNDDIVPGYPLNDEGSTVNSNQDHFNQLLSNLLNSLEGKALASSMGEKKFAAGAVSVTTAQTLYGMAQCEPDSTSGRCEACFRSAIAAIPSCCNGSGGARLLLPICSIRYQLHPFLYNSTMLIPSSGSKSTLMIVAIVLPIAILALFLFIGCCWWRRRQRENREDVQDVNDSLRRYLTEEESLHFDLATIEAATDSFSDEMKIGEGGFGAVYKGTFPNGEEIAVKRLSRTSLQGDREFKNEVLLIAQLQHKNLVRLLGFCMERTERILVYEFIQNSSLDHYLFGHEDHGVLDWARRYKIIVGIVRGVQYLHEDSRLKVIHRDLKASNVLLDADMNPKISDFGMAKVFHGDQSQENTRTGRVVGTL	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1330g00012	497	ProSitePatterns	Protein kinases ATP-binding region signature.	335	357	IPR017441	GO:0005524
	Vium1330g00012	497	Gene3D	Phosphorylase Kinase; domain 1	290	404	-	-
	Vium1330g00012	497	ProSiteProfiles	Gnk2-homologous domain profile.	31	132	IPR002902	-
	Vium1330g00012	497	SMART	serkin_6	329	497	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1330g00012	497	FunFam	Cysteine-rich receptor-like protein kinase 10	288	404	-	-
	Vium1330g00012	497	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	450	462	IPR008271	GO:0004672\|GO:0006468
	Vium1330g00012	497	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	34	496	-	-
	Vium1330g00012	497	ProSiteProfiles	Gnk2-homologous domain profile.	137	247	IPR002902	-
	Vium1330g00012	497	FunFam	Os07g0541700 protein	405	496	-	-
	Vium1330g00012	497	Gene3D	Transferase(Phosphotransferase) domain 1	405	497	-	-
	Vium1330g00012	497	SUPERFAMILY	Protein kinase-like (PK-like)	305	496	IPR011009	-
	Vium1330g00012	497	ProSiteProfiles	Protein kinase domain profile.	329	497	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1330g00012	497	Pfam	Protein kinase domain	330	490	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1330g00012	497	Gene3D	-	144	247	IPR038408	-
	Vium1330g00012	497	Gene3D	-	29	132	IPR038408	-
	Vium1330g00012	497	FunFam	Cysteine-rich receptor-like protein kinase 10	141	247	-	-
	Vium1330g00012	497	Pfam	Salt stress response/antifungal	37	129	IPR002902	-
	Vium1330g00012	497	Pfam	Salt stress response/antifungal	151	243	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1330g00012	Vium-Chr1330	49785	53032	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1330g00012	18	496	Receptor kinase-like Gene Family	AT4G05200	44.685	4.78e-139	415

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vium1330g00012		Pkinase	2.6e-34	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1330g00012	-		-	ccaj:109806163	679.478