Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1330g00011 ATGTGCATCTTGAAATCCTCTTCAACCCACTTGGTTATAATTCTCTCCCTGTTTCTGTTCCTAAACTCTGCAAGTGAAGCTGCTCCTACATATACCACACATGTCTGCACAGATGGATCCTTTTACCTACCCAACACAACATTCCAAACCAACTTGAATCTCCTTCTATCATCCCTCGTCTCTAACGCCACCCTCCACGATGGTTACTACCTCACCAACATCTCCCTTGGAGCCCCTGGTGAGGTCAAGGGACTCTTCCTCTGCCGCGGTGACGTCACCCCCTCCGTCTGCCACGACTGTGTCGCCGCCGCTGCCGACAACATCATACGCCTCTGCACCAACACTACAGAGTCTGTAATATGGTATGACGAGTGTATGGTGCGCTACTCCAACCTTTCCTTCCTCAACGACATAGTACCAAGTGTCGGCATGGGTTCCCAACAGAGCATTCCTGATTCCGATATTACTAGCTTCAACAATTTTCTTGCATCCGCGCTGAAGGGTGTGGTGCAGGATGCCGTGAATTCTCTTTTGGGTAGAATGTTTGCCACAAGAGAAGCGAATTTCACTAGCTCAATGACTCTGTACGCCCTGGCGCAGTGTAGGCCTGATTTATCCGCCTTCACTTGCAACACGTGCTTAACAGGCGCCATCACTATCCTCGGTGAAGGAAAACGAGGTGCACGCAACCTGCTTCCTAGTTGTAATGTCAGATATGAATTGTACCCTTTTTACAATGTTTCCGCCGTCTCCACTAAACCAGAGTCTCTTTCCCCATCTTCAGGAAAAAACAATATCTCTATAATTCTTGCTATTGCCGTCCCAATTGTCGTTGCGGTGCTACTTTTCATAGTTGGCGTCTGCTTCCTACGCAAGAGGGCAAGCTATAAATACAATAACTCTTTTGGCCAGGATTCAATTGTGGAAGGTCTTAGCGATGGGGACTCCTTGCAATTTGACCTGGCTATGATTGAAGCTGCCACGAACAGATTCTCGGATGAAAACAAGATTGGCAAAGGTGGATTTGGGGTGGTTTATAAGGGTGTCCTACCTGATGGACAGGAGATAGCTGTGAAGAGGTTGTCAGTAACCTCCTTGCAGGGTGCAGTAGAGTTCAGGAATGAAGCCGCCCTTGTGGCCAAGCTTCAACATAGAAATTTAGTGAGACTATTGGGATTTTGCTTGGAGGGCCAGGAAAAGATTCTTATCTATGAATACATACCAAACAAAAGCCTTGATTACTTTCTATTCAATTCTATGAAGCAAAGAGAGTTAGATTGGTCACAACGCTACAAGATTATAGTTGGCATTGCTAGAGGAATTCTTTATTTACATGAAGATTCTCAACTTAGAATTGTTCACCGTGATGTCAAAGCTAGCAATGTTTTATTAGATGAAAATATGAACCCAAAGATTTCTGATTTTGGCATGGCAAAGATTTTCCAGGCAGACCAGACTCAAGTAAATACAGGAAGAATAGTTGGGACTTATGGTTACATGTCTCCGGAATATGCAATGCGTGGTCAGTTTTCCATGAAATCGGATGTGTTCAGCTTTGGTGTCTTGGTCTTGGAGATTGTGAGTGGCAAGAAGAATACTGATTTTTATCAATCGAATCACGCTGATGACCTCTTAATCTTTGCTTGGAAGAAATGGACAGAGCAAACACCAATGGAGTTTGTGGATCCAACTCTGAGAGGTTCTTGTTCGAGAAATGAAGTAAACAGATGCATCCACATTGGTTTATTATGCGTTCAGGAAAATCCATCAGACCGACCATCAATGGCCACAATTGCACTTATGCTTAACAGTTATTCAGTGACCATGTCAATGCCACGACAACCAGCATCTTTCCTGCGTGGAAGAAATCCTAACAGGTTTAACCGAGAGCTAGAGTCTGATCAGTCTACCACCGATCAATCTACCTCCTGTTCAATTCCATACTCTGTGAATGAAGTATCCGTCACTGAAGTATATCCTCGCTAA 1986 0.4456 MCILKSSSTHLVIILSLFLFLNSASEAAPTYTTHVCTDGSFYLPNTTFQTNLNLLLSSLVSNATLHDGYYLTNISLGAPGEVKGLFLCRGDVTPSVCHDCVAAAADNIIRLCTNTTESVIWYDECMVRYSNLSFLNDIVPSVGMGSQQSIPDSDITSFNNFLASALKGVVQDAVNSLLGRMFATREANFTSSMTLYALAQCRPDLSAFTCNTCLTGAITILGEGKRGARNLLPSCNVRYELYPFYNVSAVSTKPESLSPSSGKNNISIILAIAVPIVVAVLLFIVGVCFLRKRASYKYNNSFGQDSIVEGLSDGDSLQFDLAMIEAATNRFSDENKIGKGGFGVVYKGVLPDGQEIAVKRLSVTSLQGAVEFRNEAALVAKLQHRNLVRLLGFCLEGQEKILIYEYIPNKSLDYFLFNSMKQRELDWSQRYKIIVGIARGILYLHEDSQLRIVHRDVKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSMKSDVFSFGVLVLEIVSGKKNTDFYQSNHADDLLIFAWKKWTEQTPMEFVDPTLRGSCSRNEVNRCIHIGLLCVQENPSDRPSMATIALMLNSYSVTMSMPRQPASFLRGRNPNRFNRELESDQSTTDQSTSCSIPYSVNEVSVTEVYPR 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1330g00011 661 ProSiteProfiles Protein kinase domain profile. 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00011 661 ProSiteProfiles Gnk2-homologous domain profile. 138 244 IPR002902 -
Vium1330g00011 661 SMART serkin_6 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00011 661 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Vium1330g00011 661 Pfam Salt stress response/antifungal 40 131 IPR002902 -
Vium1330g00011 661 Pfam Salt stress response/antifungal 157 242 IPR002902 -
Vium1330g00011 661 CDD STKc_IRAK 337 603 - -
Vium1330g00011 661 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 292 406 - -
Vium1330g00011 661 Gene3D - 28 134 IPR038408 -
Vium1330g00011 661 Gene3D - 143 244 IPR038408 -
Vium1330g00011 661 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 134 - -
Vium1330g00011 661 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 657 - -
Vium1330g00011 661 Gene3D Transferase(Phosphotransferase) domain 1 407 614 - -
Vium1330g00011 661 FunFam cysteine-rich receptor-like protein kinase 10 407 609 - -
Vium1330g00011 661 MobiDBLite consensus disorder prediction 618 644 - -
Vium1330g00011 661 Pfam Protein tyrosine and serine/threonine kinase 334 599 IPR001245 GO:0004672|GO:0006468
Vium1330g00011 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Vium1330g00011 661 SUPERFAMILY Protein kinase-like (PK-like) 317 628 IPR011009 -
Vium1330g00011 661 Gene3D Phosphorylase Kinase; domain 1 294 406 - -
Vium1330g00011 661 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1330g00011 Vium-Chr1330 46369 49554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1330g00011 12 661 Receptor kinase-like Gene Family AT4G05200 49.778 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1330g00011 PK_Tyr_Ser-Thr 3.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1330g00011 - - var:108324780 1196.8