Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1330g00007 ATGAGAATCATGATTACCAAGTCCAAAAATAGTCTAAAACTGTTCCTTTTTTGCACCCTTGTGCTCACCGTTACAGAAACATCTGCTTCGGTGTTCAACAACGTTAGCTGCTCCAGTAACCACACTTTCACTCCAAACACCACCTTCAATGCCAACCTCAACACCCTTCTCTCCCACCTTTCCTCCAACGTCACCAACAACTTTAGATTCTTCAACACAACATCTGGGGAGGGTTCGGACACCGTCTATGGCCTCTACATGTGCCGTGGAGACGTGCCGTTTGCTCTATGCAGAGAGTGTGTGGGTTTCGCGACCCTAACCATAGCCTCGTCGTGTCCCACATCGAAAGAGGCTGTGATTTGGTACAACGAGTGTTTGTTGCGCTACTCTTACAGGTTCTTCTTCTCTAAAATGGAAGAATGGCCACGGCACCAGGTCAATATCCCATTGGGGGATCCTGTCGTTTTGCACAGTAATAAATTCTACACTGCTTTAGGATCCATTTTCAATGAACTTCCAAATCAAGCAGCACTGGCTCTCAGAGGGTCCAACCCTTATGCTGTTAAGCAAGAAAACGCTTCTGCGAGTGTGACCCTGTATGGCCTCGCTCAGTGCACACCAGACTTGGCCGCCGGAGATTGCAAACGGTGTATCGCCGATGCGGCGGCGGAATTCGCCGTGTCTTGTTGCGGAGGGAGCATAGGGGCAAGTGTTCTGTTTCCCAGTTGCATTGTTAGGTATGAAACGTATCCGTTTTATCAGCATTCAGGAACCTCCGCGCCAACAACGATTAAGGGTTCAGGAAATATTCGCACTGAAGTGATTGTGATAGCCGTTGTCATGGTTGTCGTTTTGGTAATCATTTTTTTCTTTGGCTACTACGGTTTCAACCGCATAAAAGCGAGAAAGAAAAGCAAGGCCAGTGACGACAGAGAAAACTTTGGGGTAGAAATCAGTGTCTTGGAGTCCTTGGAATTTGATTTTGCTACAATTGAAGCAGCAACAAACAAGTTTTCTGAAGACCGCAGGATCGGCAAAGGGGGTTACGGAGAAGTCTACAAGGGAATCCTTCCTAACGGTGAAGAAGTAGCTGTAAAGAGATTGTCAACAAATTCTAAGCAGGGAGCGGAGGAATTCAAGAATGAAGTGTTGTTAATAGCTAAACTTCAACACAAAAATTTGGTGAGGTTAATAGGATTTTGCCAACAAGACAGAGAGAAAATACTTATCTATGAATATGTCCCTAACAAAAGCCTTGATCACTTTCTATTTGATCCCGCAACACACAGAATATTAACTTGGTCAGAGCGGTATAAAATCATTAAAGGAATTGCAAGAGGAATTCTTTATCTTCATGAAGACTCTCGTCTTAAGATTATACATCGTGATATCAAACCAAGCAATGTTCTATTGGACAACGACTTCAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGATACAAACCAGATTCAAGGATGTACGAACAGAGTTGTGGGTACATACGGTTACATGCCTCCCGAGTATGCCATGCATGGACACTTTTCTGAAAAGTCTGATGTATTCAGTTTTGGAGTTATGATTCTTGAGATTATCAGTGGAAAGAAGAATTCTTGTTCTTATGAATCATCTCGTGTCGATGATCTCTTGAGTTATGCATGGAACAATTGGAGGGATGTATCACCATTTCAATTGTTGGATCCGAGTCTTGTGGAATCTTACAGTCCAAACGAAGTTGAGAAATGTATGCAGATTGGTTTATTGTGTGTGCAAGAAAATCCTGATGACAGACCAATAATAGGAACCATCGTTTCATATCTTAGCAACCCTTCGGTTGAAATGCCATTCCCTTTAGAGCCAGCGTTTTTCATGCAAGGCAGAGTTAGAAGACATTCAGCTGAACATCAATCATCTTCAGGTTACTCCATCAATCATTCTTTCTCCACCTCTGTAAATAACATGTCCACTACCGTATTCTTCCCTAGATAG 1995 0.4316 MRIMITKSKNSLKLFLFCTLVLTVTETSASVFNNVSCSSNHTFTPNTTFNANLNTLLSHLSSNVTNNFRFFNTTSGEGSDTVYGLYMCRGDVPFALCRECVGFATLTIASSCPTSKEAVIWYNECLLRYSYRFFFSKMEEWPRHQVNIPLGDPVVLHSNKFYTALGSIFNELPNQAALALRGSNPYAVKQENASASVTLYGLAQCTPDLAAGDCKRCIADAAAEFAVSCCGGSIGASVLFPSCIVRYETYPFYQHSGTSAPTTIKGSGNIRTEVIVIAVVMVVVLVIIFFFGYYGFNRIKARKKSKASDDRENFGVEISVLESLEFDFATIEAATNKFSEDRRIGKGGYGEVYKGILPNGEEVAVKRLSTNSKQGAEEFKNEVLLIAKLQHKNLVRLIGFCQQDREKILIYEYVPNKSLDHFLFDPATHRILTWSERYKIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNDFNPKISDFGMARMVDTNQIQGCTNRVVGTYGYMPPEYAMHGHFSEKSDVFSFGVMILEIISGKKNSCSYESSRVDDLLSYAWNNWRDVSPFQLLDPSLVESYSPNEVEKCMQIGLLCVQENPDDRPIIGTIVSYLSNPSVEMPFPLEPAFFMQGRVRRHSAEHQSSSGYSINHSFSTSVNNMSTTVFFPR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1330g00007 664 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Vium1330g00007 664 Gene3D Phosphorylase Kinase; domain 1 298 413 - -
Vium1330g00007 664 Gene3D - 30 134 IPR038408 -
Vium1330g00007 664 Gene3D - 154 252 IPR038408 -
Vium1330g00007 664 ProSiteProfiles Protein kinase domain profile. 338 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00007 664 SMART serkin_6 338 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00007 664 SUPERFAMILY Protein kinase-like (PK-like) 324 635 IPR011009 -
Vium1330g00007 664 Pfam Salt stress response/antifungal 159 250 IPR002902 -
Vium1330g00007 664 Pfam Salt stress response/antifungal 37 130 IPR002902 -
Vium1330g00007 664 ProSiteProfiles Gnk2-homologous domain profile. 142 252 IPR002902 -
Vium1330g00007 664 CDD STKc_IRAK 344 609 - -
Vium1330g00007 664 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 134 - -
Vium1330g00007 664 FunFam Cysteine-rich receptor-like protein kinase 10 298 413 - -
Vium1330g00007 664 FunFam Putative cysteine-rich receptor-like protein kinase 9 154 252 - -
Vium1330g00007 664 Gene3D Transferase(Phosphotransferase) domain 1 414 616 - -
Vium1330g00007 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vium1330g00007 664 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Vium1330g00007 664 Pfam Protein kinase domain 339 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00007 664 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 660 - -
Vium1330g00007 664 FunFam cysteine-rich receptor-like protein kinase 10 414 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1330g00007 Vium-Chr1330 32913 36233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1330g00007 9 664 Receptor kinase-like Gene Family AT4G05200 43.275 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1330g00007 Pkinase 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1330g00007 - - var:108324780 1254.97