Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1330g00006 ATGATTTCACCTGGAGGAATTGTTACGGTTGTCATCTTTCTTGGCTTCACAATGCTAATCTCTTTTCACTGTTATTTCTTATGGAGAAGAGCAAGAAAGCGCAAGTATAAGGTTCTTTTGAAAGAAAACTTTGGTCAAGAAAGTGTCACTCTAGAAGGATTACAATTTGATTTGGTCACAATTCAAGCGGCAACAAATAACTTTTCAAATGAAAACAAGATTGGAAAAGGTGGATTTGGAGAAGTTTACAAGGGCATCTTATCTTCTGGACTACATATAGCAGTAAAAAGATTATCACAAAGTTCTACACAAGGTTCCGTTGAATTTAAGAATGAAGTTTTATTAATAGCCAAATTACAACACAAAAACCTCGTGGAGCTAATAGGCTTTTGTCTAGAGGCACAAGAAAAGATACTTGTATACAAATTCATGCAGAATGGGAGTCTTGATAAATTTCTCTTTGGTTTGATACTTGATCTTACACTCTTGAAATTTAGCATTTTTCTCGTACACTATACTAGGCTTGTAAATATGTATTTGCCTACTTTCCTCATTCACCTAATAAACATTGCAGGTTATCAACAAAAAATGTTGAGCTGGTATGAACGTTTCAAAATTATAGAAGGAATTGCTCGAGGAATTCTTTATTTACATGAACATTCTCGACTTAAAGTTATACATCGTGATATCAAACCTAGTAATATTTTATTAGATGAAAATATGAATCCTAAAATATCAGATTTTGGTATGGCTAGAATTATGGAAATAGACCAAGATCGTGGAAGGACCAGACGTATAGTTGGAACATATGGTTATATGTCACCAGAATATGCAATGTTTGGACAATTTTCTGAAAAATCAGATATTTTTAGTTTTGGAGTTATGGTTTTGGAGATTATTACAGGAAAAAAGAATACAAGTTCTCATGAATCACATTACATGCCAAATGGACTCATGAGCTATGTTTGGAGAAAATGGATGGATGAAACACCATTGAGCATATTAGACCCGTTTTTGGAAGAAAATTATTCTAGAATTGAAGTAATTAAGTGTATTCATATTAGTTTATTATGTGTTCAAGAAAACAAAAATATTAGACCTACAATAGCAGATGTTGTTTCATATCTTGATGGTCGTCACACGATTGAATTTCCATCTCCACAAGAACCAGCATATTTGTTGTTCGACAAGATGGATACAAAAATAGTCTCAGAACACTATTCTGTTAATGAGATGTCCATCAGTACATATTATGCTCGATAA 1263 0.3278 MISPGGIVTVVIFLGFTMLISFHCYFLWRRARKRKYKVLLKENFGQESVTLEGLQFDLVTIQAATNNFSNENKIGKGGFGEVYKGILSSGLHIAVKRLSQSSTQGSVEFKNEVLLIAKLQHKNLVELIGFCLEAQEKILVYKFMQNGSLDKFLFGLILDLTLLKFSIFLVHYTRLVNMYLPTFLIHLINIAGYQQKMLSWYERFKIIEGIARGILYLHEHSRLKVIHRDIKPSNILLDENMNPKISDFGMARIMEIDQDRGRTRRIVGTYGYMSPEYAMFGQFSEKSDIFSFGVMVLEIITGKKNTSSHESHYMPNGLMSYVWRKWMDETPLSILDPFLEENYSRIEVIKCIHISLLCVQENKNIRPTIADVVSYLDGRHTIEFPSPQEPAYLLFDKMDTKIVSEHYSVNEMSISTYYAR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1330g00006 420 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 415 - -
Vium1330g00006 420 FunFam cysteine-rich receptor-like protein kinase 10 177 383 - -
Vium1330g00006 420 ProSitePatterns Protein kinases ATP-binding region signature. 74 96 IPR017441 GO:0005524
Vium1330g00006 420 CDD STKc_IRAK 74 378 - -
Vium1330g00006 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Vium1330g00006 420 SMART serkin_6 68 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00006 420 ProSiteProfiles Protein kinase domain profile. 68 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00006 420 SUPERFAMILY Protein kinase-like (PK-like) 52 412 IPR011009 -
Vium1330g00006 420 Gene3D Transferase(Phosphotransferase) domain 1 185 385 - -
Vium1330g00006 420 Gene3D Phosphorylase Kinase; domain 1 29 143 - -
Vium1330g00006 420 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 29 143 - -
Vium1330g00006 420 Pfam Protein tyrosine and serine/threonine kinase 70 318 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1330g00006 Vium-Chr1330 26774 28948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1330g00006 7 420 Receptor kinase-like Gene Family AT4G05200 44.884 9.48e-123 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1330g00006 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1330g00006 - - vum:124825834 833.943