Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1330g00004 ATGGCGTCGTGTTCCAGCTATGTCATAACCTTTATCTTTTTTATCTCCCTCTGTTTTACTGCGGCTAGAGCTCAGGGACTTCAATATCAGTACCAAGTTTGCTCAAGAAACAAATTCACTCCCAATAGCACCTTCCAAACGCACCTCACAACCCTATTCTCTTCTTTATCTTCCAAAGCCTCCAACAATGTTCAATTCTTCAACAATACCGTCACTGGGACAAACCCCTCAGACACAGTGTACGGACTATTCATGTGCAGAGGGGACATCCCCTCCGACCTATGTAATAATTGCGTCGGAAACGCGACACAGAGACTGTCCACAAACGGAGATTGTTCGTTGTCCATAGAAGCGGTGGTGTATTACGACGAGTGCATAGTTCGGTATTCCAACCTCTCTTTCTTCGGCACCGCAGACATGGAAGTGAGCTCAGGGTATGTCCTGGCGAGCCCCATCAACATGACAAACCAAGAAAGCTTCAAGCGTTTGGTGTATGTGAGCCTGAACGAAACGGCAGATGAGGCAATGAGTTCAGGGGACGGTGAGAAGTTCGCAACAAAGGAAACAGACATAGATATATTTCAGAAGCTGTATTGTCTTGCGCAGTGCACGCCAGACCTGTCTCCGAGAGATTGCAGAAGCTGTCTGAACAGTTTGATAAATTCGGATCTTCCACGGTGCTGTGCAGGGAGGCAGGGAGGAAGAGTTTTATATCCTAACTGCGTCATCAGGTTTGAAATTTACCCTTTTTATCGATCTCTTGGTTCGGCTCCTACGCCAACACCGCCGCCGCCGAAATTGGGAGAAAATAATTCGAGTAGATCAAGAACAATTATCTTAGTTGTTGTACCCATTGTTAGTTTGGCAATTCTCTCTGCTTTTTGCTACTATTTGCTAAGGAGAAGAGCAAGAAAGAGGTCAAAGCATCTTCTTAAAGAAAATTTTGGTGAAGAAAGCTCCATTCTAGAAGGGTTGCAATTTGATTTGTCTACTGTTAAATTAGCAACAAATAATTTTTCAAATGAGAGTGAGATTGGTAAAGGTGGATTTGGAGAGGTTTATAAGGGCATTCTTCCAGATGGACGACATATAGCCGTTAAAAGACTTTCAATAGAATCCAAACAAGGTTCAGTTGAATTTAAAAATGAGATTTTGTTGATAGCTAAGTTACAACATAGGAATCTTGTGGCATTCATGGGATTTTGTTTAGAAGAGCAAGAAAAGATCCTTATTTATGAGTATGTGCCAAATCATAGTCTGGATTACTTGTTATTTGATTTTGGCTTGGCTAGAATTTTTGATGTGGATCAAAATCGTGCTGAAACTGATCGAATCGTTGGAACTTATGGTTATATGTCTCCTGAATATGCAATGCTTGGACAATTTTCTGAAAAGTCTGATGTTTTTAGTTTTGGAATTATAGTTCTTGAGATTATTACCGGTAAAAAAAATTCTCATTCATATGAATCCCACCACATGGGAGAAGGTCTCATGACTGAGGTGTGGAGAGAATGGAAGAATGAAACACCAATGGGTATATTGGATCAAAATATGAAAGAAAATTATAGTGAAAGTGAAGTTGTTAGATGCCTTCAAATTGGTTTATTATGTGTTCAAGAGAATCCAAATATTAGACCTACGATGGGAAGAGTAGTTTCCTATCTTAATAATCATTCACTTGAATTGCCATCACCTCAAGAACCTGCATTTTTCTTACACGGAATAGATAAAAGAGCTGTGCAGCAAGGATCAAGTTCCAGCATTTCTGCAAACAGTTCCATGCCATTCTCTGTCAACGAGATGTCTACAAGTAATTTTTATCCACGATAA 1830 0.4033 MASCSSYVITFIFFISLCFTAARAQGLQYQYQVCSRNKFTPNSTFQTHLTTLFSSLSSKASNNVQFFNNTVTGTNPSDTVYGLFMCRGDIPSDLCNNCVGNATQRLSTNGDCSLSIEAVVYYDECIVRYSNLSFFGTADMEVSSGYVLASPINMTNQESFKRLVYVSLNETADEAMSSGDGEKFATKETDIDIFQKLYCLAQCTPDLSPRDCRSCLNSLINSDLPRCCAGRQGGRVLYPNCVIRFEIYPFYRSLGSAPTPTPPPPKLGENNSSRSRTIILVVVPIVSLAILSAFCYYLLRRRARKRSKHLLKENFGEESSILEGLQFDLSTVKLATNNFSNESEIGKGGFGEVYKGILPDGRHIAVKRLSIESKQGSVEFKNEILLIAKLQHRNLVAFMGFCLEEQEKILIYEYVPNHSLDYLLFDFGLARIFDVDQNRAETDRIVGTYGYMSPEYAMLGQFSEKSDVFSFGIIVLEIITGKKNSHSYESHHMGEGLMTEVWREWKNETPMGILDQNMKENYSESEVVRCLQIGLLCVQENPNIRPTMGRVVSYLNNHSLELPSPQEPAFFLHGIDKRAVQQGSSSSISANSSMPFSVNEMSTSNFYPR 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1330g00004 609 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 426 - -
Vium1330g00004 609 FunFam Cysteine-rich receptor-like protein kinase 25 144 250 - -
Vium1330g00004 609 ProSiteProfiles Gnk2-homologous domain profile. 142 250 IPR002902 -
Vium1330g00004 609 ProSiteProfiles Protein kinase domain profile. 248 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00004 609 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 27 133 - -
Vium1330g00004 609 Gene3D Phosphorylase Kinase; domain 1 300 409 - -
Vium1330g00004 609 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Vium1330g00004 609 ProSiteProfiles Gnk2-homologous domain profile. 27 134 IPR002902 -
Vium1330g00004 609 Pfam Protein kinase domain 340 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00004 609 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 300 414 - -
Vium1330g00004 609 Gene3D Transferase(Phosphotransferase) domain 1 410 560 - -
Vium1330g00004 609 Gene3D - 26 134 IPR038408 -
Vium1330g00004 609 Gene3D - 145 250 IPR038408 -
Vium1330g00004 609 Pfam Salt stress response/antifungal 154 247 IPR002902 -
Vium1330g00004 609 Pfam Salt stress response/antifungal 34 131 IPR002902 -
Vium1330g00004 609 Pfam Protein tyrosine and serine/threonine kinase 426 554 IPR001245 GO:0004672|GO:0006468
Vium1330g00004 609 SUPERFAMILY Protein kinase-like (PK-like) 323 587 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1330g00004 Vium-Chr1330 18736 22776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1330g00004 1 609 Receptor kinase-like Gene Family AT4G05200 39.942 6.68e-155 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1330g00004 PK_Tyr_Ser-Thr 1.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1330g00004 - - vum:124825842 1189.87