Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1330g00003 ATGTCACCTGAATATGCAATGTTTGGACAATTCTCCGAAAAATCAGATGTTTTTAGTTTTGGAATTATCATTTTTGAGATTATTACTGGTAAGAAAAATGGAAATTCTTATGGACCAAACCAAGGTGAAGAAGGCTTGATGACCAATGTTTGGACAAATTGGACGAATCGAACACCATTGAGTATACTTGAATCAAATATGAAAGAAAAATATTTTCAAAGTGAAGTGATTCGTTGCATTGAAATTGGTTTATTATGTGTCCAAGAAAATCCAGACGTAAGACCTACAATTGCAGAAGTTGTTTCTTATCTTAATGATCTGACACTTGAATTGCCATCTCCTCAAGAACCAGCATTTTTCTCCCATGCAATAGATCCAAAAATAGTCATGCAACAGCAGGGGTCAAGTTCCAACTCTTCTGTCATTGCTTCTATACCATTTTCTATCAATGAAATGTCTATCAGTGACTTTTATCCACGATGA 483 0.3458 MSPEYAMFGQFSEKSDVFSFGIIIFEIITGKKNGNSYGPNQGEEGLMTNVWTNWTNRTPLSILESNMKEKYFQSEVIRCIEIGLLCVQENPDVRPTIAEVVSYLNDLTLELPSPQEPAFFSHAIDPKIVMQQQGSSSNSSVIASIPFSINEMSISDFYPR 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1330g00003 160 Gene3D Transferase(Phosphotransferase) domain 1 1 116 - -
Vium1330g00003 160 ProSiteProfiles Protein kinase domain profile. 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00003 160 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 155 - -
Vium1330g00003 160 Pfam Protein tyrosine and serine/threonine kinase 1 104 IPR001245 GO:0004672|GO:0006468
Vium1330g00003 160 SUPERFAMILY Protein kinase-like (PK-like) 1 140 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1330g00003 Vium-Chr1330 14276 14996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1330g00003 1 160 Receptor kinase-like Gene Family AT4G23140 46.250 2.62e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1330g00003 PK_Tyr_Ser-Thr 6.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1330g00003 - - vum:124825830 310.457