LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1330g00002	ATGGCTTCGTATCTAAAATACGTGATACCCTTTATATTTTCTATCATTTTCAACTTCTGTGCCATTAGAGCACAGGGCCTTTCTTATCAGTACCAAGTTTGTTCAACAAACAAATTCATTCCCAATAGCACCTTCCAAAGCCACCTCACAACCCTCTTCTCTTCCTTAACTTCTGAAGCCTCCAACAATGTCCAATTCTTCAACAACACCATCACGGGGACAAACTCTTCCTACACAGTCTACGGATTATTCATGTGCAGGGGTGACATCCCCTCCGACATGTGTAATCACTGTGTCGGAAACGGAACACAGAGACTATCCGCAGACTGCGCCTTGTCCAGAGCAGCAGTGGTGTATTACGATGAGTGCATAGTTAGGTATTCCAACCGTTCTTTCTTCTCCACCCTAACCATGCAAGCTGGTTATGCCCTTTGGAACCCCACCAATATGACCAACCAAGAAAGCTTCAAGATTTTACTGTATGACACCATGAACAAAACTGCGGATGAAGCAGCCCATTTTCCTACTGGTTCTAAAAAGTTCGCCACAAGGGAAACAAGCATAGACATATTTCAGAAGCTCTATTGTCTTACTCAGTGCACACAAGACCTGTCTCCCGGCGATTGCAGAAGCTGTCTGGATAGCTTGATAAACTTGGATCTTCCGGACTGCTGTGCAGGATCCCAGGGAGGAAGAGTTTATTACCCGAACTGCATCATCAGGTTCGAAATTTACCCTTTTTTTCGATCCCTTTCAACGGCACCAACACCATCACCGGCAGGACTCGTTCCTCCGGCCAATTCAGGAGTTGGGGAAGAAAGTTCCACTCTAGAAGGATTGCAATTTGCTTTGGCCACCATTCAAGTAGCAACAAATAATTTTTCCCTTGAGAACAAGATTGGAAAAGGTGGATTCGGAGAGGTTTATAAGGGTATTCTTATTGATGGACGACATATAGCTGTTAAAAGACTTTCAACAAGTTCTAGACAAGGTTCAGTCGAGTTTAAAAATGAAATTTTATTGATAGCCAAACTCCAACATAAAAATCTTGTAGCGTTGGTAGGATTTTGTTTGGAAGAAGAAGAGAAAATCCTTATTTACGAGCATGTATCAAAAGGTGGTCTGGACTACTTTTTATTTGGAAATCCAGAAGAGAAGTTAAGTTGGTATCAACGCTATAATATTATCAAAGGAACTGCTCTTGGAATTCTTTATTTACATGACTATTCTCGACTCAAAATTATTCACCGTGATCTTAAACCAAGTAATATTTTATTAGATGAAAATATGAATCCTAAAATTTCAGATTTTGGATTGGCTAGAATTATAGACATAGAGCAAAATCGCGTGGAAACTAATCGAATAGTTGGAACATAG	1377	0.4067	MASYLKYVIPFIFSIIFNFCAIRAQGLSYQYQVCSTNKFIPNSTFQSHLTTLFSSLTSEASNNVQFFNNTITGTNSSYTVYGLFMCRGDIPSDMCNHCVGNGTQRLSADCALSRAAVVYYDECIVRYSNRSFFSTLTMQAGYALWNPTNMTNQESFKILLYDTMNKTADEAAHFPTGSKKFATRETSIDIFQKLYCLTQCTQDLSPGDCRSCLDSLINLDLPDCCAGSQGGRVYYPNCIIRFEIYPFFRSLSTAPTPSPAGLVPPANSGVGEESSTLEGLQFALATIQVATNNFSLENKIGKGGFGEVYKGILIDGRHIAVKRLSTSSRQGSVEFKNEILLIAKLQHKNLVALVGFCLEEEEKILIYEHVSKGGLDYFLFGNPEEKLSWYQRYNIIKGTALGILYLHDYSRLKIIHRDLKPSNILLDENMNPKISDFGLARIIDIEQNRVETNRIVGT	458

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1330g00002	458	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	414	426	IPR008271	GO:0004672\|GO:0006468
	Vium1330g00002	458	FunFam	Os07g0541700 protein	370	458	-	-
	Vium1330g00002	458	SUPERFAMILY	Protein kinase-like (PK-like)	276	458	IPR011009	-
	Vium1330g00002	458	ProSiteProfiles	Protein kinase domain profile.	294	458	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1330g00002	458	ProSiteProfiles	Gnk2-homologous domain profile.	138	247	IPR002902	-
	Vium1330g00002	458	ProSitePatterns	Protein kinases ATP-binding region signature.	300	322	IPR017441	GO:0005524
	Vium1330g00002	458	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	38	458	-	-
	Vium1330g00002	458	Pfam	Protein kinase domain	295	457	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1330g00002	458	SMART	serkin_6	294	456	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1330g00002	458	Gene3D	Transferase(Phosphotransferase) domain 1	370	458	-	-
	Vium1330g00002	458	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	264	369	-	-
	Vium1330g00002	458	Gene3D	Phosphorylase Kinase; domain 1	267	369	-	-
	Vium1330g00002	458	ProSiteProfiles	Gnk2-homologous domain profile.	27	132	IPR002902	-
	Vium1330g00002	458	FunFam	Cysteine-rich receptor-like protein kinase 25	140	247	-	-
	Vium1330g00002	458	Pfam	Salt stress response/antifungal	149	244	IPR002902	-
	Vium1330g00002	458	Pfam	Salt stress response/antifungal	34	129	IPR002902	-
	Vium1330g00002	458	Gene3D	-	27	132	IPR038408	-
	Vium1330g00002	458	Gene3D	-	138	247	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1330g00002	Vium-Chr1330	12234	14389	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1330g00002	1	458	Receptor kinase-like Gene Family	AT4G05200	42.115	5.30e-125	377

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vium1330g00002		Pkinase	1.9e-33	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1330g00002	-		-	vum:124825831	912.909