Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1330g00001 ATGGCTTCATTTTACTTCTTCATTTTGCACCTATCTTTCTTTTCCCTCTTTCTTCATTGCTCTCCTTATTATATCATCCAAGGTGCTACCCATGAAAATCCCAAAGCTTTTTATAACTGCACAAGGAACACCACTTCTGCTTCCTACAGCGTGGCTTACCGTTCTAACGTCAAAACACTCCTAGATTGGCTCTCCTCCAATGCCACTAACCATGACAGATTCTACAACACCACAGTTGCCAGTGGACACACAGCAAACACTGCCTATGGTAGCTTCCTTTGTACCAGAGGCTTCCCTAAACTCTGCCAACAATGCGTGACAGAAGCTGCCAAACTTCTATCATCACTTTGCACCATTGCAAAAGAGGCTATTATATGGTACGAAGCGTGCTATGTGCGCTACTCTGATAGTTCTTTCTTCTCCGCTGTGGAGGAAAGTCCTAAACTCTCCTTTACGAATGATCAGGACTATAAGGGTCCGGTTGAGCGCTTCAACGTTATTGTGTGGGATATGCTGAGCGATTTGAGAAATGAGGCAGCAAGTGCTTCTGATAAATGCGCTGTTAAGTCTGTGAATATCTCAGATAACCAAAAGTCTTATGGCTATGTTTGGTGCCTACCATACCTGTCCAAAGACAAGTGCAGATGGTGTCTTAGCGAAGCCATAGCAAACAATCCAAACGGTTGCTGCACAGGAAAATCTGGTGCAACAGTAATATTTCCCAGTTGTGGTATTAGATACGAATTATATCCATTCCTTTTGGTACATAGTAGTTTGGTGTCTCCTCCACCACTTCTCAACATTCCTCCTCCTTTTGCTTCACCAGGGAAAAGAAAACAGAGGACACTAACAATAATTGTGACGGTTCCAATTGTTGTTTCACTGGTGCTTTTATCCTTTGGTTGCGGCTGTATTCTACGAAGGAAAGAATCAAAGATTCAACACGATATTCTCAAAGAAAGCTTTGGAAATGACAGTACCTCTTTGGAGTCCTTGCGATTTGAATTAGTCAAAATTGAAGCTGCAACAAATAGATTCGCTAAAGAAAACATGATAGGCAAAGGCGGATTTGGGGAGGTTTACAGGGGTATTTTTTCAGATGGAAAAGAAATAGCTGTGAAGAGGCTTACTGGAAGCTCTCGGCAGGGTGCAGTAGAGTTTAAAAATGAAGTTCAAGTTATAGCTAAGCTTCAACACAGAAATTTAGTAAGATTACTCGGATTTTGCTTGGAAGACGATGAAAAGATACTCATTTATGAGTATGTACCAAACAAGAGTCTTGATTATTTTTTATTAGATATCAAGAAGCGAAGATTGCTATCGTGGTCTGAACGACTGAATATTATAAAAGGAATAGCACGAGGAATTTTATATCTGCATGAAGATTCTTGTTTAAAAATAATACACCGTGATCTAAAACCCAGTAATGTTTTATTAGATAGTAATATGAATCCAAAAATTTCTGACTTTGGAATGGCTAGAATTGTTGCCGGAGATGAGATCGAAGCAAGTACGGGCAGAATTGTAGGAACATATGGTTACATGTCTCCAGAATACGCCATGCATGGACAATTTTCGGTGAAATCTGATGTATTTAGTTTTGGTGTTATGGTTCTGGAAATTATTAATGGAAAGAGGAAAGGTTGCTCGTCTGAACCAGAGGTTATTGATGACATCCGCAGACATGCTTGGACAAAATGGAGAAAGGAAACAGCACTAGAAGTGTTGGATCCTGAGATAGAAGGAGCTTATTGTGGTGAAGAAGTGATGAAATGTATCCAGATCGGTTTGCTGTGCGTTCAAGAAGATCCAAACGATAGGCCTACAATGGCAAGAGTTGTGCTTTATCTCAATAACCCTTCAATTAACTTGCCTTGCCCTCATGAACCAGGATATGTTAAGCATAACAGACAACAAGTCAACATCACCACCGATAAAGAATTCGATAATGTCAGTGATTCCGTCAACGAAATTTCTCTAACTAAATTCTTTCCTCGATAA 2001 0.4008 MASFYFFILHLSFFSLFLHCSPYYIIQGATHENPKAFYNCTRNTTSASYSVAYRSNVKTLLDWLSSNATNHDRFYNTTVASGHTANTAYGSFLCTRGFPKLCQQCVTEAAKLLSSLCTIAKEAIIWYEACYVRYSDSSFFSAVEESPKLSFTNDQDYKGPVERFNVIVWDMLSDLRNEAASASDKCAVKSVNISDNQKSYGYVWCLPYLSKDKCRWCLSEAIANNPNGCCTGKSGATVIFPSCGIRYELYPFLLVHSSLVSPPPLLNIPPPFASPGKRKQRTLTIIVTVPIVVSLVLLSFGCGCILRRKESKIQHDILKESFGNDSTSLESLRFELVKIEAATNRFAKENMIGKGGFGEVYRGIFSDGKEIAVKRLTGSSRQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEDDEKILIYEYVPNKSLDYFLLDIKKRRLLSWSERLNIIKGIARGILYLHEDSCLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVAGDEIEASTGRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIINGKRKGCSSEPEVIDDIRRHAWTKWRKETALEVLDPEIEGAYCGEEVMKCIQIGLLCVQEDPNDRPTMARVVLYLNNPSINLPCPHEPGYVKHNRQQVNITTDKEFDNVSDSVNEISLTKFFPR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1330g00001 666 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Vium1330g00001 666 FunFam cysteine-rich receptor-like protein kinase 10 422 624 - -
Vium1330g00001 666 SUPERFAMILY Protein kinase-like (PK-like) 329 637 IPR011009 -
Vium1330g00001 666 Gene3D - 34 139 IPR038408 -
Vium1330g00001 666 Gene3D - 148 252 IPR038408 -
Vium1330g00001 666 Pfam Protein tyrosine and serine/threonine kinase 349 615 IPR001245 GO:0004672|GO:0006468
Vium1330g00001 666 Gene3D Transferase(Phosphotransferase) domain 1 422 623 - -
Vium1330g00001 666 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 307 421 - -
Vium1330g00001 666 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Vium1330g00001 666 CDD STKc_IRAK 352 619 - -
Vium1330g00001 666 Pfam Salt stress response/antifungal 156 250 IPR002902 -
Vium1330g00001 666 Pfam Salt stress response/antifungal 40 136 IPR002902 -
Vium1330g00001 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 657 - -
Vium1330g00001 666 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00001 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vium1330g00001 666 ProSiteProfiles Gnk2-homologous domain profile. 35 139 IPR002902 -
Vium1330g00001 666 SMART serkin_6 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1330g00001 666 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1330g00001 Vium-Chr1330 2845 6722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1330g00001 7 666 Receptor kinase-like Gene Family AT4G05200 44.169 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1330g00001 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1330g00001 - - vun:114191742 1155.2