Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13303g00002 ATGGGTGTTGATTACTACGACATCCTTCAGGTCGATAGGGATGCTAAGGAAGAGGACCTGAGGAAAGCGTACAAGAGACTCGCCATGAAATGGCACCCCGACAAAAATCTCACGAAGAAGGAAGAGTCTGAAGCAATGTTTAAACAAGTATCTGAAGCGTATGAGGTTTTAAGTGATCCCCAGAAAAGGGCACGTTTTGATAATACTCTAAAACCTCGGGTGGAACCTGCTGCTGATGCTGGTGCATCTGGTGATGGTGGACCCACCCGATACCAGAACCCGCTCCCCAAAGCACCTCCAGTGGAGCGCAAGTTGCCTTGTACTCTGGAGGAATTGTATTAG 342 0.4854 MGVDYYDILQVDRDAKEEDLRKAYKRLAMKWHPDKNLTKKEESEAMFKQVSEAYEVLSDPQKRARFDNTLKPRVEPAADAGASGDGGPTRYQNPLPKAPPVERKLPCTLEELY 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13303g00002 113 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vium13303g00002 113 Gene3D DnaJ domain 3 97 IPR036869 -
Vium13303g00002 113 CDD DnaJ 4 59 IPR001623 -
Vium13303g00002 113 SMART dnaj_3 3 62 IPR001623 -
Vium13303g00002 113 Pfam DnaJ domain 4 67 IPR001623 -
Vium13303g00002 113 MobiDBLite consensus disorder prediction 64 113 - -
Vium13303g00002 113 PANTHER DNAJ HOMOLOG SUBFAMILY B 3 81 - -
Vium13303g00002 113 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vium13303g00002 113 SUPERFAMILY Chaperone J-domain 3 77 IPR036869 -
Vium13303g00002 113 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vium13303g00002 113 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vium13303g00002 113 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vium13303g00002 113 PRINTS DnaJ domain signature 6 24 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13303g00002 Vium-Chr13303 9895 10450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13303g00002 5 68 C2H2 Transcription Factor Family AT1G74250 36.765 1.49e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13303g00002 K09510 - vum:124821925 231.876