Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium132g00048 ATGGATGCTGTTTTTGCCCTCTCTCAAGCTCCCAGAGCTCATTTTCTCCGTTCTCTCATCCAATCTTTTGCCTGCACTTACGTTTCTCTATGGCAACACTCACTTTTATCCAAGTATATATCTCTCTTTATATTTCGTTTGTTCTTTCTTGATGGTTTCTACAATGCTCTCAACAACAAACCAACTTCTTCTCAAAGCCTTTTTCATCAGTATGGGGCTTTAACGTTTGATGTCAGTGATGATCTGGAAAACGCTTTTACCTTTTCCTTTTTTTACCATTTTAGGTGTGTTCCAGGACTTGCTTTCAAGAATCAACTTCCCTACATACAACTCAAACTCTCGGATCTCCTACCAATCACATCCACCCAAATTCAAGCACAATTCTTTCAAGAAGCAGGGATTGAGATGGCTGTCTTCATGGGGTGCAAAGAGGGAGAAATCGAACTTGGCTTCTCCAACATTCCTCAAGCTGACATTGAGACAGCCCTTAAGAATTTATTCCCAGAAGATTTCTATATGCGTTTCCAATCAATTGATCAGAATCCATATTCATCGTCATCATCTTCTTTTATAATATCATCTACAAATACCTTTAATCAATCAATCAATGTTCCGGGAACTTCCCACTCCAACTTCCCTGATGCCCTCGGTGTGGGTCCCACACAACCGATTTCTCACCAACCATTGTCTCAAGTCATTCCATTTCCAAGCCATTTACCGACACCAGAGGGTGAACATCAAGAAATAGTAAGAGCATTAATCCGAGTCCTGTCTTCAACTTCTCAGCAGGAGCTTTCCCATCAAGTTTTGCCTCATAATTCTGTAAAACACCCTGGAGCTGCCGATGTCGTGAGATATATACCAGATTCAAATATAAACCCACACATGGAGTCCAACTTTAGCAGGCGAAACCTGCAGAATACATCATTTCCATTGCTTAAAAACTTAAATTCAAAGAGAATGAGAGAACGCCATACTATTAAACCAACCCACCCCATTAGTTCCCAGAAGTACTATCACACGGTATCCGAAAGAAAACGTCGTGAAAAACTCAGTGAGTGTTTTCAGGAACTCAGCGCACTTCTTCCTCTTGGAACAAAGACAAACAAAAGGTGGGTTCTTACAGCAGCAAAGGAGACGATGAGATCTTTGATGGTTGAAATTGAAGAGCTTAAGATGAGAAATGAGCAGCTGATGAGAGTTTTGTCAGGCAAAGAAGTTGGTAGTAGTAGGGAGGAAGACAGAGGCAGGTCCTATAATGAAAGATTGAATATTCGGGTTTTGCATGCATCAGAATCGAGTTCATCAGAAGAGCAAATGGTGAACTTGGAAGTGACGGTGAGAGAACAAAGCAGTGAAGTTAATGTATTGGTTCGCATATTGGAGTTCTTAGAAAGGGTTCAGAACGTAACCTTGATTTCCACGAACACAAACCTCCATATTACAGAAGGAGGGACAGCCATTAATGTATTAACCTTCAGGCTGAGGATTATTGAGGGTAGTGAATGGGACGAGGTTGGCTTCGAGGAAGCAGTAAGAAGAGTGGTTGCTGACATAACACATCGTGAATTCTACCCATAA 1581 0.413 MDAVFALSQAPRAHFLRSLIQSFACTYVSLWQHSLLSKYISLFIFRLFFLDGFYNALNNKPTSSQSLFHQYGALTFDVSDDLENAFTFSFFYHFRCVPGLAFKNQLPYIQLKLSDLLPITSTQIQAQFFQEAGIEMAVFMGCKEGEIELGFSNIPQADIETALKNLFPEDFYMRFQSIDQNPYSSSSSSFIISSTNTFNQSINVPGTSHSNFPDALGVGPTQPISHQPLSQVIPFPSHLPTPEGEHQEIVRALIRVLSSTSQQELSHQVLPHNSVKHPGAADVVRYIPDSNINPHMESNFSRRNLQNTSFPLLKNLNSKRMRERHTIKPTHPISSQKYYHTVSERKRREKLSECFQELSALLPLGTKTNKRWVLTAAKETMRSLMVEIEELKMRNEQLMRVLSGKEVGSSREEDRGRSYNERLNIRVLHASESSSSEEQMVNLEVTVREQSSEVNVLVRILEFLERVQNVTLISTNTNLHITEGGTAINVLTFRLRIIEGSEWDEVGFEEAVRRVVADITHREFYP 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium132g00048 526 Coils Coil 374 401 - -
Vium132g00048 526 Gene3D - 334 407 IPR036638 GO:0046983
Vium132g00048 526 SMART finulus 341 390 IPR011598 GO:0046983
Vium132g00048 526 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 121 518 IPR044658 -
Vium132g00048 526 Pfam Helix-loop-helix DNA-binding domain 339 384 IPR011598 GO:0046983
Vium132g00048 526 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 401 IPR036638 GO:0046983
Vium132g00048 526 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium132g00048 Vium-Chr132 350190 353082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium132g00048 324 521 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 44.279 2.64e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium132g00048 HLH 8.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium132g00048 - - vum:124823621 1034.63