Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium132g00031 ATGGCTCCTAGAATCCTTCTATGCGGCGACGTTTTAGGTCGCCTCAGCCAACTCTTCAAGCGCGTCTCTTCAGTGAGCAAATCTGCAGGTCCATTCGATGCGCTCTTGTGCGTAGGCCAGTTCTTCCCGGACTCACCGGAGCAACTGGATGAATTCACCGCCTACATTGAAGGTGGATCACAGATTCCGCTTCCGACTTACTTCATCGGAGATTACGGCGTCGCCGCCCCTAAATTTCTCTTGCAAGCTTCCAAGGACTCCGCCAACCGCGGCTTCATGATGGACGGCTTCAAGGTTTGCCACAACTTATATTGGTTGAAAGGCAGTGGCAAATTCCCCCTCTTCGGGTTATCCGTGGCCTATTTATCTGGTAGGAAGTCGTCCAGTGTTCAACAGTTTGGAACTTATACCGAAGATGACGTTGATGCTTTGCGAGCTATTGCAGAGGAACCAGAAATTATTGATCTGTTCTTGACTAATGAATGGCCCAGTGGCGTCACCAATGGAGCAGCTGCTTCGGACATTCCTGCTGGAGCCTCTGATGTTGTAGGCAGTGATTCAACCATATCGGAGTTAGTACAGGAGATCAAGCCACGTTATCACATTGCAGGCACAAAAGGTATGTACTATGCCCGTGAACCATATACCAATGTTGACGCTGTGCATATCACCCGTTTCATAGGGCTTGCATCCGTTGGAAATAGAAATAAACAGAAATTTATTCATGCAATCTCTCCCACACCTTCTTCGACCATGTCTTCAACTGAGATTGCTATGAAAACCACAAATACCACCTTATCACCGTACACATTTGTGGAGAAAAGAACACCTCCTATGGATTCCACGAAGAGATCCAGTGATTCTATCTCTGAGTCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACATGAAACTGGACAAGCTGATAAGATGTGTTTCAAATTTGTCTCTTCTGGATCTTGTCCACGTGGAGAGAAGTGCCATTTTCGTCATGATACAGATGCAAGGGAGCAGTGTAAGAGAGGTGTTTGTTTAGATTTTTTGATTAAGGGAAAATGTGAAAGGGGCCCAGACTGCAATTTTAAGCACAACTTGCTGGATGAAGGTGACAGGGATCCTTCTAGGAGGTCCGGATCTGGCAGCTCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGAAGACACATTTAATCGTTAGCATTGGGGAGAATTATTACTTGGCACTGGCTAAAGGTCCACTTGTTGAGGACCATGCACTGATAATACCCGTTGAGCATGGGTTTAATACCTTATCTATGTCTTCTGAATCTGAAACTGAGCTCTCTAGGTTCCAGAACAGTCTCAAGAGTTACTGCAGGGGCCAAGAAAAGGAAGTGATATTTTTTGAGTGGGCCTCCTTACGTCGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTTATGGTTGAAAAAGTGTTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGCCAAGACATTTGATAGCATTTCTGATGGAAGGAAGTTTTTGAAGACTCAAATTGGTGGGGGTTCAGGATTGTTCTATGCTCAGGTTCCAGGAGGCAAAATTCTGCTGCATCATGTTGAAAAGAACGAGAAATTTCCTGTCCAATTCGGCCGCGAGGTCATGGCTGGGTTGCTCAATATGGCAGATAATGCAGATTGGAGGAGTCACAGACATAGCAAAGATGAGGAAATGAAAATTGTTGAAAATTTCAAGAGTCGATTTCAAGAATATGATCCAAACTGCTAA 1806 0.4463 MAPRILLCGDVLGRLSQLFKRVSSVSKSAGPFDALLCVGQFFPDSPEQLDEFTAYIEGGSQIPLPTYFIGDYGVAAPKFLLQASKDSANRGFMMDGFKVCHNLYWLKGSGKFPLFGLSVAYLSGRKSSSVQQFGTYTEDDVDALRAIAEEPEIIDLFLTNEWPSGVTNGAAASDIPAGASDVVGSDSTISELVQEIKPRYHIAGTKGMYYAREPYTNVDAVHITRFIGLASVGNRNKQKFIHAISPTPSSTMSSTEIAMKTTNTTLSPYTFVEKRTPPMDSTKRSSDSISESQYWRYDVSQKRQKHETGQADKMCFKFVSSGSCPRGEKCHFRHDTDAREQCKRGVCLDFLIKGKCERGPDCNFKHNLLDEGDRDPSRRSGSGSSKECWFCLSSPNVKTHLIVSIGENYYLALAKGPLVEDHALIIPVEHGFNTLSMSSESETELSRFQNSLKSYCRGQEKEVIFFEWASLRRTHANLQAIPIPSSKAVMVEKVFNLAAQKLGFEFVAKTFDSISDGRKFLKTQIGGGSGLFYAQVPGGKILLHHVEKNEKFPVQFGREVMAGLLNMADNADWRSHRHSKDEEMKIVENFKSRFQEYDPNC 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium132g00031 601 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Vium132g00031 601 SUPERFAMILY HIT-like 386 455 IPR036265 -
Vium132g00031 601 CDD MPP_CWF19_N 6 232 - -
Vium132g00031 601 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872
Vium132g00031 601 SMART c3hfinal6 311 336 IPR000571 GO:0046872
Vium132g00031 601 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Vium132g00031 601 SUPERFAMILY CCCH zinc finger 312 336 IPR036855 GO:0046872
Vium132g00031 601 Pfam Protein similar to CwfJ C-terminus 1 384 495 IPR006768 -
Vium132g00031 601 Pfam Protein similar to CwfJ C-terminus 2 521 598 IPR006767 -
Vium132g00031 601 Gene3D - 298 369 - -
Vium132g00031 601 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 600 IPR040194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium132g00031 Vium-Chr132 235514 240978 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium132g00031 CwfJ_C_1 2.4e-35 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium132g00031 K24939 - gmx:100782106 1054.66