Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium132g00025 ATGATTCCAGCCTATCGCCACTCTTCTGTGATTCCTCTGGATCTTAATGAAGATCAAAACCATGAGCTCTTCACTCCCACTTATCATGCTTACCCTTCTTTTTCTTATCTATCTTCATCATATCCCGTCCTCTTCAACCCTCCAGATCAAGAAGATGGATCACACTCCTGGGAACCAACAAAGCACTTATCAGGTCATGAAGAGGCTGAGAAGATTAACCCTACCATGGGATCATGGGATCACTCGGTTGCACAAAGTGAGCTCAAGGTGAAAGTTTGCAAGCAGAAAGAGAGGAGTGAAGATCACGAAGCAGCTGCTGAGGATGGTTCGGTGAAGTTGATGTCTTCAAAGATGAGAATGATGCAGAAGATGATGGGGTCCGATCAAACTGGTGCATATATAGAAGACAGCACTGTGAATAAGTTTGAAGATGAGAAGCAACCATTATCACCGCTTGGAACTGATAACAGCAGCAGCAACAACTGTTCAAACCACAGTAACAACACTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCCTGTGGAATTCGACAGAGGAAGGCGAGACGAGCCATGGCAGCTGCAGCATCGGGAAATGGAACAGTGATTTTTGAAACTGAGAAGTCTGTGAAGGGAAACAAGTTGCAGAAGAAAGAGAAGAAGGCAAGAACTCAGGGTGCACCACAGATGAAAAAGAAGCGCAAGCATGGAGTTGGAGCAAAGCCATCTCAAAGCAGAAACAAGTTTGGTTTTGAGGATTTGACATTACGCCTAAGAAAGAGCTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTTCTTATGGCTTTATCTTATGGCCTTGTTCACGGATGA 921 0.4582 MIPAYRHSSVIPLDLNEDQNHELFTPTYHAYPSFSYLSSSYPVLFNPPDQEDGSHSWEPTKHLSGHEEAEKINPTMGSWDHSVAQSELKVKVCKQKERSEDHEAAAEDGSVKLMSSKMRMMQKMMGSDQTGAYIEDSTVNKFEDEKQPLSPLGTDNSSSNNCSNHSNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAASGNGTVIFETEKSVKGNKLQKKEKKARTQGAPQMKKKRKHGVGAKPSQSRNKFGFEDLTLRLRKSLAMHQVFPQDEKEAAILLMALSYGLVHG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium132g00025 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 207 - -
Vium132g00025 306 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 15 306 - -
Vium132g00025 306 FunFam GATA transcription factor 21 167 255 - -
Vium132g00025 306 MobiDBLite consensus disorder prediction 54 68 - -
Vium132g00025 306 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
Vium132g00025 306 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
Vium132g00025 306 Gene3D - 171 209 IPR013088 GO:0006355|GO:0008270
Vium132g00025 306 MobiDBLite consensus disorder prediction 226 263 - -
Vium132g00025 306 MobiDBLite consensus disorder prediction 47 68 - -
Vium132g00025 306 MobiDBLite consensus disorder prediction 244 258 - -
Vium132g00025 306 MobiDBLite consensus disorder prediction 227 243 - -
Vium132g00025 306 SMART GATA_3 167 218 IPR000679 GO:0006355|GO:0043565
Vium132g00025 306 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355|GO:0043565
Vium132g00025 306 CDD ZnF_GATA 172 200 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium132g00025 Vium-Chr132 184847 186603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium132g00025 109 306 C2C2-Gata Transcription Factor Family AT4G26150 41.818 2.31e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium132g00025 GATA 3.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium132g00025 - - gmx:100810698 385.571