Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium132g00012 ATGATCACAAGCATCCAACACAAAAATCTGGTTCGCCTTCTCGGATGCTGCACAGATGGGCCTCAAAAGATACTCGTGTACGAATATATGAAGAACAGAAGTTTGGACCTCATAATTTATGGAGGGAGTGATCAATTTCTGAATTGGAACACTAGATTCCAAATTATTCTTGGTGTAGCAAGGGGATTGCAGTACCTCCATGAGGATTCGCATTTAAGAATTGTTCACCGAGACATCAAAGCTAGCAACATTCTTCTTGACGAGAAGTTTCAGCCTAGGATTGGAGACTTTGGGCTAGCTAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGCACTCAGTTCGCTGGAACATTAGGTTATACAGCTCCTGAGTATGCCATTAGAGGAGAGTTGTCCGAAAAGGCAGACATCTATAGTTTCGGAGTTCTTGTGCTTGAAATCATCTGTTGCAGGAAAAACACAGACCTCACTTTACCATCAGAAATGCAGTACCTCCCTGAATATGCATGGAAAGTTTACGAGAAGTCAATGTTGATGGAAATAGTGGATCCAAGGCTGCGAGAACATGGCATGGAGGAAAAGGATGTTATGCAAGCATTTCACGTGGCCTTATCGTGCCTTCAGCCACATGCGGATTTGAGACCTGCGATGTCAGAAATCGTAGCATTGCTGACATTCAAAGTTGAAATGGTTGCCAAGCCGATCAGGCCAACCTTCGTTCACAGGAGGCGCGTAATGGATGATGAGAACCACTCTTGGGGAGCCATATCCTCCTCCGAACCTTCCACAACTGCAGTGGCATCATTGTAG 810 0.4481 MITSIQHKNLVRLLGCCTDGPQKILVYEYMKNRSLDLIIYGGSDQFLNWNTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIICCRKNTDLTLPSEMQYLPEYAWKVYEKSMLMEIVDPRLREHGMEEKDVMQAFHVALSCLQPHADLRPAMSEIVALLTFKVEMVAKPIRPTFVHRRRVMDDENHSWGAISSSEPSTTAVASL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium132g00012 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Vium132g00012 269 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Vium132g00012 269 SUPERFAMILY Protein kinase-like (PK-like) 3 227 IPR011009 -
Vium132g00012 269 Gene3D Transferase(Phosphotransferase) domain 1 31 234 - -
Vium132g00012 269 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 30 234 - -
Vium132g00012 269 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 252 - -
Vium132g00012 269 SMART serkin_6 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium132g00012 269 Pfam Protein tyrosine and serine/threonine kinase 2 223 IPR001245 GO:0004672|GO:0006468
Vium132g00012 269 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium132g00012 269 PIRSF ILK 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium132g00012 Vium-Chr132 122328 125325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium132g00012 2 262 Receptor kinase-like Gene Family AT1G56120 44.828 1.08e-77 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium132g00012 PK_Tyr_Ser-Thr 1.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium132g00012 - - vum:124823710 544.658