Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium132g00010 ATGGAAGACGCCGAAGAATGCATCACTGGGCTATGTTTGGGACTTGGAATGGGAGGGTATGTCCCCAAAAAAGGTAAGCAGAAAGAGAACAGGCCCGTGGTAGACTTAGCGTTTGAGCTTTGTCCAAAAGGGGAAGCCATTAACTTGAATCATGATAAGGTAGAGAGCACTGATTCTGATAACAGCAACAACAACAACAACAACGGATGCAGAAAAAAACTCAGGCTTTCCAAGGACCAATCATCCATGCTTGAGAACAGCTTCAAACTGCATAGCACTCTTAATCCGGTCCAAAAACAAACACTGGCTGATCAATTGAATTTAAAGACTAGACAAGTCGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGGACCGTGAGTGGTTGAAAAAACAGTGTCAAAATCTAAGCGATGAGAACAAAAGATTGAAGAAGGAATTGCAGGAACTACGTGCACTTAAGGTTGGACCATCGCCTCTGTGCATTCAACTATCCAAAACGGCAACTCTGACTATGTGCTCTTCGTGCGAGAAACTAGTAAAACTGAACGAAGGAAAGAACAATATAGAGTTAAAGGGTACAAATTGA 609 0.4253 MEDAEECITGLCLGLGMGGYVPKKGKQKENRPVVDLAFELCPKGEAINLNHDKVESTDSDNSNNNNNNGCRKKLRLSKDQSSMLENSFKLHSTLNPVQKQTLADQLNLKTRQVEVWFQNRRARTKLKQTEVDREWLKKQCQNLSDENKRLKKELQELRALKVGPSPLCIQLSKTATLTMCSSCEKLVKLNEGKNNIELKGTN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium132g00010 202 SMART halz 127 170 IPR003106 GO:0006355|GO:0043565
Vium132g00010 202 Pfam Homeodomain 71 125 IPR001356 GO:0003677
Vium132g00010 202 Gene3D - 75 125 - -
Vium132g00010 202 SMART HOX_1 69 131 IPR001356 GO:0003677
Vium132g00010 202 Coils Coil 119 160 - -
Vium132g00010 202 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Vium132g00010 202 CDD homeodomain 71 128 IPR001356 GO:0003677
Vium132g00010 202 SUPERFAMILY Homeodomain-like 56 128 IPR009057 -
Vium132g00010 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 53 189 - -
Vium132g00010 202 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium132g00010 Vium-Chr132 99879 101410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium132g00010 57 185 Homeobox Transcription Factor Family AT3G60390 62.791 4.60e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vium132g00010 Homeodomain 4.9e-16 CL0123