Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium132g00003 ATGGCAGTAGATCTGGCAGGTGTTGCCAAGATTAGGATGGAAGAACAGACAGCCATCGAAGAAGCAGCTTCCGCTGGATTGAAAAGTATGGAGCATCTCATTCGTGTTCTTTCCTCCCAAATCCCTTCCTCTTCTGCTTCTGCCTCTGCCTCTGCCTCCTCCTCTTCTTCCACACACCACCACCGTCTTAATCTCAACCACCTTGACTGCACCGAAATCACCGACTTCACTGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACTGGTCACGCTCGCTTTCGCCGCGCACCTTCTCATTCCTCCCCCTCCCCCTCTCTTCCTTCTCCGCCGCAGCCACACGCTCAAAAACTCACTCTTCATTTTGCAAACCCCAAGGTCAAGTCAAATCCCAATCCCAACCCCAACCCTTCTTTCACGGATTTGTCGGTTTCTCAATATTCCAAGACCAAAGACACCACCTTTAGCATATCCCCTCCCATCTCCACCACCACCTCCTCCTTCATGTCCTCTGTCACGGCAGACGGCAGCGTTTCCGACGGCAAGATCGGCCCCGCCATCCTCGCCTCCGGGAAGCCTCCTCTCTCCTCATCCCACCGTAAAAGGTGTCACGACGCCACCCTCTCGGCCGGGAAAACCTCATCCTCCGCCCACTGTCATTGCTCCAAGAGAAGGAAATCTCGTATGAAACGAATGATTCGAGTGCCGGCGATAAGTTCGAAGATCGCCGATATCCCTGCGGATGAGTACTCGTGGAGAAAGTATGGTCAAAAACCCATCAAGGGGTCACCCTACCCACGAGGGTACTACAAGTGCAGTAGCGTGCGAGGGTGTCCGGCCAGAAAGCACGTGGAGCGAGCCCAGGATGACCCTAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAGCCGCGTCTGCCGGAAGCTGGCGTGCCCGGCCCCGTGGCTTTCGGTGCTCAGGCTGTTTAA 984 0.5488 MAVDLAGVAKIRMEEQTAIEEAASAGLKSMEHLIRVLSSQIPSSSASASASASSSSSTHHHRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSHSSPSPSLPSPPQPHAQKLTLHFANPKVKSNPNPNPNPSFTDLSVSQYSKTKDTTFSISPPISTTTSSFMSSVTADGSVSDGKIGPAILASGKPPLSSSHRKRCHDATLSAGKTSSSAHCHCSKRRKSRMKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRLPEAGVPGPVAFGAQAV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium132g00003 327 FunFam WRKY transcription factor 65 232 309 - -
Vium132g00003 327 SUPERFAMILY WRKY DNA-binding domain 246 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium132g00003 327 SMART WRKY_cls 248 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium132g00003 327 MobiDBLite consensus disorder prediction 96 118 - -
Vium132g00003 327 Pfam Plant zinc cluster domain 202 246 IPR018872 -
Vium132g00003 327 Gene3D WRKY domain 234 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium132g00003 327 ProSiteProfiles WRKY domain profile. 243 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium132g00003 327 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 309 IPR044810 GO:0003700
Vium132g00003 327 Pfam WRKY DNA -binding domain 250 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium132g00003 Vium-Chr132 23705 25429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium132g00003 1 317 WRKY Transcription Factor Family AT2G24570 49.570 1.64e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium132g00003 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium132g00003 - - var:108322692 563.918