Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1329g00005 ATGGAAGATGAGAGGCAGAAAGAGGCAAAGAGTCCAAGGCATGGCCCTGAGAAGAGTGAAGCGGTTCGGTCGAGGTGGACTCCCAAGCCGGAACAAATTCTCATACTGGAATCCATCTTCAACAGTGGCATGGTGAACCCTCCCAAAGATGAAACCGTAAGAATAAGGAAGCTGCTTGAGAAATTCGGTGCTGTGGGTGATGCCAACGTCTTCTACTGGTTCCAGAACCGCCGCTCCAGATCCCGCCGCCGCCAGCGCCAGATGATGCAGCAGGCAGCCGCCACCGCTGCTGCGATTAACCAGCCTCAGCCACAGCCTCAGCCACAGCCACAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCTTCAGCCTCATGGTCTTGTTGCTGGTGGTGCAATTCAGCATGATCATCATCATAATCAGGTTAACCTTGTTGCAAGTGAAAGTGCTACTTCAAACATTGGTCTTGGTTCTTGTGTTTCTTATGATCTCCTAGGTGGTTCCTCTTCATCGTGTAGTGGTGGTGGACAACAAGGCATGGGTGGTTTCTTTTCTGGTTCTTCTCCTCAAATGGGTTTTCCTGAAATAATTGATCACACCCCACCTTCCCCATCAGTTTTGTTCCCTCCTTTTGATCCCAATTTGACCTTCCAGACTGGATATGGAGGCACTGATATCTCAGCATTCATCACAGTTTTCATCAATGGGATTGCAACAGAACTTCCAAAGGGACCAATAGACATGAAGACTGTGTTTGGAGAAGATGTTATGCTAGTTCATTCCTCTGGAGTGCCTATTCTCGCCAATGATTTCGGATTCTTGATGCAGAACCTTCAGCATGGAGAAAGTTACTTTCTGGTATCAAAGACAACATAA 882 0.4875 MEDERQKEAKSPRHGPEKSEAVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQRQMMQQAAATAAAINQPQPQPQPQPQPQPQPQPQPQPQLQPHGLVAGGAIQHDHHHNQVNLVASESATSNIGLGSCVSYDLLGGSSSSCSGGGQQGMGGFFSGSSPQMGFPEIIDHTPPSPSVLFPPFDPNLTFQTGYGGTDISAFITVFINGIATELPKGPIDMKTVFGEDVMLVHSSGVPILANDFGFLMQNLQHGESYFLVSKTT 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1329g00005 293 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Vium1329g00005 293 MobiDBLite consensus disorder prediction 103 123 - -
Vium1329g00005 293 FunFam WUSCHEL-related homeobox 11 23 90 - -
Vium1329g00005 293 Gene3D - 23 90 - -
Vium1329g00005 293 SUPERFAMILY Homeodomain-like 17 90 IPR009057 -
Vium1329g00005 293 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Vium1329g00005 293 SMART HOX_1 21 88 IPR001356 GO:0003677
Vium1329g00005 293 MobiDBLite consensus disorder prediction 86 102 - -
Vium1329g00005 293 MobiDBLite consensus disorder prediction 1 28 - -
Vium1329g00005 293 MobiDBLite consensus disorder prediction 1 25 - -
Vium1329g00005 293 MobiDBLite consensus disorder prediction 79 128 - -
Vium1329g00005 293 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 292 IPR044558 GO:0003700|GO:0048830
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1329g00005 Vium-Chr1329 97164 99489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1329g00005 19 293 Wox Gene Family AT5G17810 43.686 1.10e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium1329g00005 Homeodomain 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1329g00005 - - gmx:100818735 305.449