Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1329g00004 ATGGATTCTTCTTCATGGTACTTCAATAATGTTGCTGGTGAAGGTTTCAATGGAGTCATGAGTTTCATCCCTTCTTTTCACGTGCGTTCTCAAGCTCCGCCCTTGGGTCACGGCAAGGGGGTTTTGGGTCCAAACCTTGAGATGGGTCTTCAGATGTTGAGCCCTTCCATGGTTCAGCAGCAGGAGAGTAGGGGGAAAAAGAGAACCAGTGGTGAAGGGGTTACGAACAAGAACCTGTCTTTGAAACGTGAGGAAGAAGAAGAAGCTAACGGCTCCATTTCAGGGAAAAACGGGTTCACCAAGCTTTGTGCCAGAGGTCACTGGAGGCCAGCAGAAGATGACAAACTGAAGGAGCTGGTGGCCCAATATGGTCCCCAAAACTGGAACCTGATCGCTGAACATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGATGGTTTAACCAGTTGGATCCTAAGATCAACAAAAAGTGTTTCTGTGAGGAGGAAGAAGAAAGGCTTTTGACTGCTCATAAAATGTATGGCAGCAAATGGGCCATGATTGCAAGACTATTTCCTGGAAGAACAGATAATGCAGTGAAGAACCATTGGCATGTGATGATGTCTAGGAGGCAGAGGGAGAGGGAGCAGTCTAGTGGCGTGTATAGAAGGAGAAAACCTCTTATCAATGAACCTCTTCCAAAGGGTTTGAATCTGACACTGTCTAACAATGCAACCAGTGATGAGTCAACCATCTCAAACACCATTGATGAATCTGCCTCAACTTGCACCAACCTCTCCCTAACTCCCTCTTCAGCCAAGTTCACTCCTTTTGGTCTCTTACACCAACCAGGAGAATCAAGAGAGGATGTGTGGTTGAAGAAGTATTTTGGTGGTTGGAAAGGGTCAGAAGGTATGGTGGGAAAAAGGGTAATGGGAGTGGAGCAGTGTAGTTTTTCAGATGCAAACTCAGAAGTATCAGCATCTGAGTCAGGTGTCACCAATAGGTCTAATCTCTCAATTTCTCAAGAGAAAGAGAGTGATAAGATTAACAACATCTCATTCATTGATTTTCTTGGAGTAGGAGCTACTTAG 1077 0.4485 MDSSSWYFNNVAGEGFNGVMSFIPSFHVRSQAPPLGHGKGVLGPNLEMGLQMLSPSMVQQQESRGKKRTSGEGVTNKNLSLKREEEEEANGSISGKNGFTKLCARGHWRPAEDDKLKELVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPKINKKCFCEEEEERLLTAHKMYGSKWAMIARLFPGRTDNAVKNHWHVMMSRRQREREQSSGVYRRRKPLINEPLPKGLNLTLSNNATSDESTISNTIDESASTCTNLSLTPSSAKFTPFGLLHQPGESREDVWLKKYFGGWKGSEGMVGKRVMGVEQCSFSDANSEVSASESGVTNRSNLSISQEKESDKINNISFIDFLGVGAT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1329g00004 358 SUPERFAMILY Homeodomain-like 105 198 IPR009057 -
Vium1329g00004 358 FunFam MYB transcription factor 105 156 - -
Vium1329g00004 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 206 IPR017930 -
Vium1329g00004 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 155 IPR017930 -
Vium1329g00004 358 CDD SANT 168 202 IPR001005 -
Vium1329g00004 358 ProSiteProfiles Myb-like domain profile. 105 151 IPR001005 -
Vium1329g00004 358 CDD SANT 108 149 IPR001005 -
Vium1329g00004 358 SMART sant 156 204 IPR001005 -
Vium1329g00004 358 SMART sant 104 153 IPR001005 -
Vium1329g00004 358 Gene3D - 160 218 - -
Vium1329g00004 358 ProSiteProfiles Myb-like domain profile. 152 202 IPR001005 -
Vium1329g00004 358 Pfam Myb-like DNA-binding domain 159 200 IPR001005 -
Vium1329g00004 358 Pfam Myb-like DNA-binding domain 105 151 IPR001005 -
Vium1329g00004 358 MobiDBLite consensus disorder prediction 56 92 - -
Vium1329g00004 358 Gene3D - 105 156 - -
Vium1329g00004 358 PANTHER MYB PROTEIN-RELATED 105 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1329g00004 Vium-Chr1329 49971 52670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1329g00004 86 358 MYB Transcription Factor Family AT5G17800 45.196 2.02e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1329g00004 Myb_DNA-binding 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1329g00004 K09422 - gmx:100791795 418.698