Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13298g00001 ATGGAAAAGGCTAAAGAAGAAATAGACATGCAAATTGGGAAAGATGGATACATAAGAGAATCAGACATAAGCAAACTTGTGTATCTTCAAGCCATAGTGAAAGAGACATTAAGATTGTATCCACCAGCACCTCTTTCATCACCTCGTGTATTCATAGAAAACTGCATCTTAGGTGGCTACCACATAAAAAAGGGAACTCGACTAATGCATAACCTGTGGAAGATCCACAGAGACCCTAGTGTTTGGTCAGATCCTTTAGAATTCAAACCAGAAAGGTTCCTCACCACTCACCAACATGTGGATCTTATTGGTCGACATTTTGAGTTGTTACCCTTTGGAAGTGGGAGAAGAATGTGTGCTGGAATGTCCCTTGGCTTAAACGTGCTTCATTTCACTTTGGCTAATATGTTGCATTCCTTTGACATCTCAAATCCTTCGACCGACCCTGTTGATATGACTGAGTTCTTTGGATTTACCAACACCAGAGCTACTCCACTGGAGGTTTTGGTTAAACCACGTCTATCTCCAAACCGTTATCAAGCTTTGTAA 549 0.4098 MEKAKEEIDMQIGKDGYIRESDISKLVYLQAIVKETLRLYPPAPLSSPRVFIENCILGGYHIKKGTRLMHNLWKIHRDPSVWSDPLEFKPERFLTTHQHVDLIGRHFELLPFGSGRRMCAGMSLGLNVLHFTLANMLHSFDISNPSTDPVDMTEFFGFTNTRATPLEVLVKPRLSPNRYQAL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13298g00001 182 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 112 121 IPR017972 GO:0005506|GO:0016705
Vium13298g00001 182 Gene3D Cytochrome P450 1 175 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13298g00001 182 Pfam Cytochrome P450 1 160 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13298g00001 182 PANTHER CYTOCHROME P450 82C3-RELATED 1 179 - -
Vium13298g00001 182 PRINTS E-class P450 group I signature 30 48 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13298g00001 182 PRINTS E-class P450 group I signature 119 142 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13298g00001 182 PRINTS E-class P450 group I signature 71 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13298g00001 182 PRINTS E-class P450 group I signature 109 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13298g00001 182 PRINTS P450 superfamily signature 119 130 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13298g00001 182 PRINTS P450 superfamily signature 31 42 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13298g00001 182 PRINTS P450 superfamily signature 110 119 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13298g00001 182 SUPERFAMILY Cytochrome P450 1 173 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13298g00001 Vium-Chr13298 871 1562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13298g00001 1 174 Cytochrome P450 AT4G31940 54.286 9.48e-64 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13298g00001 - - gmx:100789386 330.102