Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13294g00001 ACACCACTTTGGCGTAACGGACCAGCTGAAAAACCTGTGCTGTGTAACGCTTGTGGATCACGATACAAGTTGAAAGGGCACCTTGATAATTATCTCCCCAAACACTACAAGAACTATGGTGAAAATCATCTCAGTGTTGAGGTTTCAGACCAACTTTCAGAGCACGGAAACAGCAATGAGTCAAACCCAGATTTCCATTTTATATCAGAACAAGATTTTGGGAACAACATCCCTACAAGGAAACGGTCAAGGGTGGTTTACAGGGAGATGACACCATTGGAGGAGTTTCGGAAGCAGCTTTTGAGTTTGTATAGAAGTGAAAAGCAGCCAAAGGAGAGGTCCCCGGAAGAGGATATATTGTTGGATAACGTCAACGGCTTCATACCCAGCAGTGAGATAGGACTTGGAGTCGTTCTCCTAAGACAGATCCTGGATCATTACCAACCGCAACCTTAA 456 0.4452 TPLWRNGPAEKPVLCNACGSRYKLKGHLDNYLPKHYKNYGENHLSVEVSDQLSEHGNSNESNPDFHFISEQDFGNNIPTRKRSRVVYREMTPLEEFRKQLLSLYRSEKQPKERSPEEDILLDNVNGFIPSSEIGLGVVLLRQILDHYQPQP 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13294g00001 151 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 1 30 - -
Vium13294g00001 151 Gene3D - 1 62 IPR013088 GO:0006355|GO:0008270
Vium13294g00001 151 PANTHER OSJNBB0038F03.10 PROTEIN 1 142 IPR044589 -
Vium13294g00001 151 SMART GATA_3 1 41 IPR000679 GO:0006355|GO:0043565
Vium13294g00001 151 Pfam GATA zinc finger 1 27 IPR000679 GO:0006355|GO:0043565
Vium13294g00001 151 CDD ZnF_GATA 1 41 IPR000679 GO:0006355|GO:0043565
Vium13294g00001 151 MobiDBLite consensus disorder prediction 49 76 - -
Vium13294g00001 151 ProSiteProfiles GATA-type zinc finger domain profile. 1 26 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13294g00001 Vium-Chr13294 616 1170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13294g00001 1 41 C2C2-Gata Transcription Factor Family AT5G47140 68.293 8.01e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium13294g00001 GATA 1.7e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13294g00001 - - var:108341731 278.485