Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1328g00001 ATGAAGGACTATTATGTCAAGGCTTTCAGACACCGAAACTTAGTTAAGCTCCTTGGTTTCTGTTTGAAAGAGAAGAACGACTCCTTGTCTACGAGTTTCTTCCCAACAAACGGTCTTGACAACCACATATTTGATCACATCGGGAGAGCACGATTGGATTGGAAAAAACGCTACAGTATAATTAAAAGCATTGCTTATGGCCTTCTTTATCTTCATGAGGATTCTCAGCAGAGGATTATTCACCGAGATCTCAAATTGAGCAATATTCTTTTAGATGAGGACATGAATCCTAAGATTTCAGATTTTGGTTTTGCAAGGCTTTAA 324 0.3827 MKDYYVKAFRHRNLVKLLGFCLKEKNDSLSTSFFPTNGLDNHIFDHIGRARLDWKKRYSIIKSIAYGLLYLHEDSQQRIIHRDLKLSNILLDEDMNPKISDFGFARL 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1328g00001 107 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 107 - -
Vium1328g00001 107 SUPERFAMILY Protein kinase-like (PK-like) 6 107 IPR011009 -
Vium1328g00001 107 Pfam Protein kinase domain 6 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1328g00001 107 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1328g00001 107 FunFam Os07g0541700 protein 34 107 - -
Vium1328g00001 107 Gene3D Transferase(Phosphotransferase) domain 1 4 107 - -
Vium1328g00001 107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 79 91 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1328g00001 Vium-Chr1328 6244 6686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1328g00001 6 107 Receptor kinase-like Gene Family AT4G23220 58.824 3.20e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1328g00001 Pkinase 9.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1328g00001 - - vum:124825821 221.861