Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13280g00001 TTATTCCAGGGTTATGTGGTTTACCGTGTGCGTGTTAGGAGGGGTGGCAGGAAGAGACCAGTTCCCAAAGGTATTGTTTACGGTAAGCCAACCAACCAAGGTGTTACTCAATTGAAGTTTCAACGCAGCAAGAGGTCCGTTGCTGAAGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCAACCTACAAATATTTTGAGATCATTCTGGTGGATGTTGCCCACAGTGCTGTAAGAAATGATCCAAGAATTAACTGGCTCTGCAATCCAGTCCATAAGCACAGGGAACTTCGTGGCCTCACTTCTGCTGGGAAAAGTAACAGGGGTTTACGTGGCAGAGGACATCTATACCACAATAACCGTCCATCACGCAGGGCAACCTGGAAGCGAAACAACACCCTTTCTCTTCGTCGTTACCGCTGA 453 0.4857 LFQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAVRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHNNRPSRRATWKRNNTLSLRRYR 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13280g00001 150 SMART Ribosomal_L15e_2 1 139 IPR000439 GO:0003735|GO:0005840|GO:0006412
Vium13280g00001 150 MobiDBLite consensus disorder prediction 110 132 - -
Vium13280g00001 150 Gene3D Ribosomal protein l15e 2 150 IPR024794 GO:0003735|GO:0005840
Vium13280g00001 150 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 3 141 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vium13280g00001 150 Pfam Ribosomal L15 3 136 IPR000439 GO:0003735|GO:0005840|GO:0006412
Vium13280g00001 150 PANTHER RIBOSOMAL PROTEIN L15 3 150 IPR000439 GO:0003735|GO:0005840|GO:0006412
Vium13280g00001 150 FunFam Ribosomal protein L15 2 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13280g00001 Vium-Chr13280 6 741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13280g00001 20 150 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 89.313 1.98e-84 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13280g00001 K02877 - gmx:100306052 283.108