Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13277g00001 ATGGAAGCGAACAAGGAGGAAGCACTTAAAGCGGTAGAGATTGCTGAAAAGCGATTTGCTGTGAGGGACTTTGCAGGTGCAAAAAACTATGCTGTAAAGGCTAGAACACTTTGTCCAGGATTAGAGGGTATATCACAAATGGTGGCCACATTTGAAGTTTACATCGCCTCTGAGGTCAAACATAATGGTGAGCTAGATTACTATTCGATTCTTGGATTAAAACCTTTTGCAGATAAGGAGGCTGTGAAGAAACAATACAAGAAGTTGGCGGTGTTGCTTCACCCAGATAAGAACAAGTGTGTGGGAGCTGACGAGGCATTTAAGCTTGTTTCCGAGGCTTGGACTTGGCTATCAGATAGTGCTATGCGCAGTTCTTATGATCTCAAGAGAAATGCGCAGTTGGGTGGGACTAACCAGATGAATCTGTCTCCTGCCCATGCTACAGGGGCTGCAGGTTATAACAAATGTTCCAATTTGTCAACCCCTCGCGGTGGGCTTGACACCTTTTGGACAATCTGCACCTCTTGTAAGGTTCAGTACGAGTATCTGCGCAAGTACGTGAATAAAAGACTGTCTTGTAAGAACTGCCGTGGCACTTTCGTGGCTGTCGAAACTGGGGCGGCCCCGGCAAATGGTTCATTTCCATATTGTCCTTGGTCATATGTGCCAGGAAATGGGTATGCAAGTCATTCATTTGATGGTGTCTCATATGTTCCAACCACTGCCCCCTATTTCAATGGGAATGGGGTTGCAGGATATCATTCTGGACATGGATATGAGTACGTTCCAAATGTTTCATTTCAGTGGGGATCTGCAGGAGTTGTTAATCAAAACGGATCAACTACCTTACCTGCTGATTCTGTCAATCGGGCAAATGGAAATGTGAAGAGGGGAAGACCAAAACTCAAAACAGGAGCTGATAAGAGGCATCATGTAGCAGAGATCATGGTGAATACAAATTCAGATGTACCATTCTCCTATAGTGAACCACAGGAAGATAAACTAAGTAGACCTGACAAGAAACAGAAAGTTGTTGTGGGAGGCACTTTCAGAAATGGCTACGAAGAAAAGGGTTCAAAATGTGATCTAGAGGCAATAGTGTCTAACGGAAATGATAGCACTGGACACGGCCAGAAACCTTCCTGTGCAGTTGAAGTTCAAACCAAACATTGTTCCATGGCACCGGCATTTGATGCAAGAAAATTATTGATTGAGAAAGCCAGGACAGTAATCAGGAAGAAACTGGAGGAG 1251 0.4436 MEANKEEALKAVEIAEKRFAVRDFAGAKNYAVKARTLCPGLEGISQMVATFEVYIASEVKHNGELDYYSILGLKPFADKEAVKKQYKKLAVLLHPDKNKCVGADEAFKLVSEAWTWLSDSAMRSSYDLKRNAQLGGTNQMNLSPAHATGAAGYNKCSNLSTPRGGLDTFWTICTSCKVQYEYLRKYVNKRLSCKNCRGTFVAVETGAAPANGSFPYCPWSYVPGNGYASHSFDGVSYVPTTAPYFNGNGVAGYHSGHGYEYVPNVSFQWGSAGVVNQNGSTTLPADSVNRANGNVKRGRPKLKTGADKRHHVAEIMVNTNSDVPFSYSEPQEDKLSRPDKKQKVVVGGTFRNGYEEKGSKCDLEAIVSNGNDSTGHGQKPSCAVEVQTKHCSMAPAFDARKLLIEKARTVIRKKLEE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13277g00001 417 SMART dnaj_3 65 122 IPR001623 -
Vium13277g00001 417 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vium13277g00001 417 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vium13277g00001 417 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vium13277g00001 417 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Vium13277g00001 417 Pfam DnaJ domain 66 127 IPR001623 -
Vium13277g00001 417 SUPERFAMILY Chaperone J-domain 58 131 IPR036869 -
Vium13277g00001 417 CDD DnaJ 66 119 IPR001623 -
Vium13277g00001 417 Gene3D DnaJ domain 55 149 IPR036869 -
Vium13277g00001 417 PANTHER BNAC03G44070D PROTEIN 1 417 - -
Vium13277g00001 417 MobiDBLite consensus disorder prediction 281 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13277g00001 Vium-Chr13277 5 1561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13277g00001 4 301 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.556 8.99e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13277g00001 - - vum:124821906 859.366