Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13272g00001 ATGAAGAACTGCGAGCTCTGCAAGGTTCCGGCTCGGACCTTCTGCGAGTCTGACCAGGCCAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGTGCCAACTTCCTCGTCGCCAGACACACGCGCACGCTCCTCTGCCACACCTGCCAGTCACCCACTCCCTGGAAGGCCTCCGGCGCCGCCCTCGGCAACACCGTCTCCCTCTGCGAGAGGTGCGCCGGTGGAACCGCCGAACAAGGTCAGGAGAGTCAAGGAGGCAATGACGACGACGTAGACACAGACGAAGATGACTACGACGACGATGATGAGACCGACGACGAAGTCGCCGCCGACGAAGACGGAGAAAACCAGGTTGTCCCTTGGTCCTCCGCGCCTCCGCCACCTGCTCCGAGCTCTTCCAGCAGCGAAGAGTCGGTTAGCCGGTGCAACAACGCCTACGAGGATGTTTCGACCACATTGAAACGACGTCGTGAGGATAATGATTTCGAGTGTTCGGATTCGAACAATTGGGGTTGTCAACTGAGCGAAGTAGAGAGAGGAGGTTAG 546 0.5952 MKNCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHTCQSPTPWKASGAALGNTVSLCERCAGGTAEQGQESQGGNDDDVDTDEDDYDDDDETDDEVAADEDGENQVVPWSSAPPPPAPSSSSSEESVSRCNNAYEDVSTTLKRRREDNDFECSDSNNWGCQLSEVERGG 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13272g00001 181 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 174 - -
Vium13272g00001 181 SMART bboxneu5 1 45 IPR000315 GO:0008270
Vium13272g00001 181 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Vium13272g00001 181 MobiDBLite consensus disorder prediction 156 181 - -
Vium13272g00001 181 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Vium13272g00001 181 CDD Bbox1_BBX-like 4 45 - -
Vium13272g00001 181 MobiDBLite consensus disorder prediction 85 113 - -
Vium13272g00001 181 MobiDBLite consensus disorder prediction 76 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13272g00001 Vium-Chr13272 3216 4594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13272g00001 2 179 C2C2-CO-like Transcription Factor Family AT5G54470 46.196 6.50e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium13272g00001 zf-B_box 7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13272g00001 - - gmx:100801024 268.855