Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1325g00001 ATGACACAAGCAGCATCACCAGCACCTCTCAAAGTTATCCATGTTTGTTCGGTGGCACCGTTTCAAGAACCAACCCTTTCCACCCTTGTGCCAACCTCTCTTCCACTAACCTTCTTCGACCTCTTATGGCTTCGATTTCCACCTGTTCAACGTCTCTTCTTCTATCACTTCCCACACCCAACCTCTTCTTTCCTTCATTCTCTTCTTCCCTCTCTCAAACTTTCTCTTTCCCTCACTCTCCAACACTTCCTCCCTTTCTCTGGCACTCTCACATGGCCCTCTCACTCTCCCAAACCCATCATCAACTATCTCCCCGGCGACACCGTTTCCTTCACTGTTGCTGAGTCCGACCTAAACTTCAACCATCTTTGCTCCCATCTCTGTGAAGCATCACAGCGCAACGATTTAGCACCCCACTTGGCCAATTCCCATGATAAAGCATCTCTGTTGGCGGTTCAAGTCACTCTCTTCCCAAACGCTGGCTTTTGCATTGGAGTAACCACACACCATGCAGCTTTCGACGGAAAATCTTCATCCATGTTCATCAAAGCATGGGCCTATATATGCTCTAACCTTCAAAACCCTACTACACCCACACCAACACCATCCTTACCTCACCATCTTACGCCTATCTTTGACAGATCATTGATTAGAGACCCTTCTGGATTGGCTGAACTGTACGCAGAGCAGTGGATGAATCATAATGGTTCGAATAACCGAAGTCTCAAGGTGTGGGAGTCTCTCACTGCAACACCGAGCGATGGACTCAAAGGTTTGTTTGAATTGACCCCTTCACAGATTCAAAAGCTCAAACAATACGGAAACTCAAAGGTCAAAGTGGCTGTTCGTCTGTCAACATTTTCTGTTACGTGTGCGTATGTGTTAGCGTGTTGGGTCAAAGCGAACCAAGTGAAGGATGAAAATGTGCTGTGCATATTTTCTGTTGACTGTAGAACGCGCTTGGATCCTCCAATTCCAGCCACGTATTTTGGAAACTGCGTTAAAGGAGAATTCGTTGTGGCTTTGACTAAGGAGTTGATTGGAAAAGATGGGTTCATTTGTGCTTTGGAGAGGATAGTTGAGGCTTTGAATAGGGTGAAGGAAGAGGGAGTTTTGAATGGAGCAGAAAAATGGGTTTCGAGTATGCATGACCCTCGGGAGGGTAGAATAATTTCTACTGGTGGGTCTCCGTTGTTTGAGGTTTATAGCATTGATTTTGGGTGGGGAAGGCCAAAGAAGGTGGATATGGTATCCACAGACAAAACAGGAGCATTTTCTCTCAGTGAAAGTAGGGATATCAGTGGAGGAATTGAGATTGGATTGCTGTTAAGTAAAAGTGAGATGGAAGATTTTACTTCCCTTTTTCTTCAAGGACTTGATTCTCTTTAG 1389 0.4543 MTQAASPAPLKVIHVCSVAPFQEPTLSTLVPTSLPLTFFDLLWLRFPPVQRLFFYHFPHPTSSFLHSLLPSLKLSLSLTLQHFLPFSGTLTWPSHSPKPIINYLPGDTVSFTVAESDLNFNHLCSHLCEASQRNDLAPHLANSHDKASLLAVQVTLFPNAGFCIGVTTHHAAFDGKSSSMFIKAWAYICSNLQNPTTPTPTPSLPHHLTPIFDRSLIRDPSGLAELYAEQWMNHNGSNNRSLKVWESLTATPSDGLKGLFELTPSQIQKLKQYGNSKVKVAVRLSTFSVTCAYVLACWVKANQVKDENVLCIFSVDCRTRLDPPIPATYFGNCVKGEFVVALTKELIGKDGFICALERIVEALNRVKEEGVLNGAEKWVSSMHDPREGRIISTGGSPLFEVYSIDFGWGRPKKVDMVSTDKTGAFSLSESRDISGGIEIGLLLSKSEMEDFTSLFLQGLDSL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1325g00001 462 Gene3D - 251 462 IPR023213 -
Vium1325g00001 462 SUPERFAMILY CoA-dependent acyltransferases 259 458 - -
Vium1325g00001 462 Gene3D - 10 243 IPR023213 -
Vium1325g00001 462 PANTHER - 10 461 - -
Vium1325g00001 462 Pfam Transferase family 33 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1325g00001 Vium-Chr1325 12191 13803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1325g00001 52 457 Monolignol Biosynthesis Gene Families AT5G48930 25.059 4.98e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1325g00001 - - pvu:PHAVU_004G040100g 615.535