Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13242g00001 ATGGGAAGCTCAAGAGACATTGCAATTGGACCGGTAGCGGTTGTGTCCCTCTTGCTTGGGACAATGCTGTCGGATGAGATCAGCGACATCAAAAGTCATGATTACCTGCGTCTTGCATTTACTGCCACCTTCTTTGCAGGAGTTACTCAAATGGCACTAGGTGTTCTCAGGCTTGGTTTCTTGATTGACTTTTTGTCTCATGCTGCTATTGTGGGATTCATGGCTGGAGCTGCCATTACAATTGCACTGCAACAGCTTAAGGGTTTTCTTGGCATAAAAAACTTCACTACGAAAACTGATATTGTTTCTGTCATGCGCTCAGTGTTTCAATCAGCACACCACGGGTGGAATTGGGAGACAATACTCATTGGAGTAGCATTCTTGACTTTCCTTCTTGTAACCAAGTACATCGCTAAAAGGAATAAGAAACTCTTTTGGGTGGCTGCAATTTCTCCTATGATATCTGTCATAGTGTCTACCTTTTTTGTCTTCATTACCAGGGCAGACAAGAAAGGAGTGGCAATTGTGAGACATGTTAAGAAGGGTGTGAATCCATCATCTGCCAACGAGATATTTTTCAGCGGAAAATACCTTGGCGCCGGTATTCGGATTGGTGTGATATCCGGAATGGTAGCTCTCACGGAAGCCGTAGCAATTGGGAGAACATTTGCTGCAATGAAAGACTATGCACTGGATGGTAACAAAGAAATGATGGCAATGGGAGCAATGAACATGGTTGGTTCTCTAACATCTTGCTATGTGGCAACAGGCTCATTTTCTCGCTCAGCGGTGAACTACATGGCCGGTTGTAAAACTGCAGTATCGAACATCGTTATGGCGGTGGTTGTGTTGTTGACTCTGCTACTCATTACGCCGCTCTTTAAGTACACTCCAAATGCGGTGCTTGCTTCTATTATAATAGCTGCGGTGCTTGGCCTTGTGAACATTGAAGCTATTATTCTTTTATGGAAGATTGACAAGTTCGATTTTGTTGCTTGCATGGGAGCCTTGTTTGGTGTGATCTTCAAAAGTGTGGAGATTGGCCTTCTAATAGCGGTGGCCATATCTTTTGCCAAAATTCTCATACAAGTGACAAGGCCAAGGGTTGCAGTACTAGGGAAGCTTTCAGGAACTACAGTTTATAGGAACATCCAGCAATACCCCAAAGCAGCCCAGATTACTGGCATGCTCATTGTCAGGGTTGACTCTGCAATCTACTTCTCAAACTCCAACTACATCAAGGAGAGAATTTTGAGATGGCTGAGTGAAGAAGAAGCCCAAAGGACAGCAAGTGGATTCCCCAGAATACAATATCTCACTGTGGATATGTCACCTGTTACTGATATTGACACAAGTGGCATCCATGCCTTGGAAGAGTTATACAAGAGTCTCCAGAAAAGAGAAGTCCAGCTTATCTTGGCAAACCCAGGACCAATTGTAATAGAGAAGCTCCATGCATCAAAGTTAACAGACTTAATCGGAGAAGATAAAATATTTCTAACAGTGGCTGATGCTGTTTCAACTTTTGTTCCAAAGGGTGAAGGAGAAGTATGA 1554 0.435 MGSSRDIAIGPVAVVSLLLGTMLSDEISDIKSHDYLRLAFTATFFAGVTQMALGVLRLGFLIDFLSHAAIVGFMAGAAITIALQQLKGFLGIKNFTTKTDIVSVMRSVFQSAHHGWNWETILIGVAFLTFLLVTKYIAKRNKKLFWVAAISPMISVIVSTFFVFITRADKKGVAIVRHVKKGVNPSSANEIFFSGKYLGAGIRIGVISGMVALTEAVAIGRTFAAMKDYALDGNKEMMAMGAMNMVGSLTSCYVATGSFSRSAVNYMAGCKTAVSNIVMAVVVLLTLLLITPLFKYTPNAVLASIIIAAVLGLVNIEAIILLWKIDKFDFVACMGALFGVIFKSVEIGLLIAVAISFAKILIQVTRPRVAVLGKLSGTTVYRNIQQYPKAAQITGMLIVRVDSAIYFSNSNYIKERILRWLSEEEAQRTASGFPRIQYLTVDMSPVTDIDTSGIHALEELYKSLQKREVQLILANPGPIVIEKLHASKLTDLIGEDKIFLTVADAVSTFVPKGEGEV 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13242g00001 517 Pfam STAS domain 387 505 IPR002645 -
Vium13242g00001 517 PANTHER SULFATE TRANSPORTER 1 508 IPR001902 GO:0016020|GO:0055085
Vium13242g00001 517 FunFam Sulfate transporter 31 366 512 - -
Vium13242g00001 517 NCBIfam sulfate permease 1 505 IPR001902 GO:0016020|GO:0055085
Vium13242g00001 517 Pfam Sulfate permease family 1 334 IPR011547 GO:0016020
Vium13242g00001 517 Gene3D STAS domain 366 510 IPR036513 -
Vium13242g00001 517 CDD STAS_SulP_like_sulfate_transporter 387 502 - -
Vium13242g00001 517 SUPERFAMILY SpoIIaa-like 389 508 IPR036513 -
Vium13242g00001 517 ProSiteProfiles STAS domain profile. 386 509 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13242g00001 Vium-Chr13242 1319 5000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13242g00001 1 517 Inorganic Solute Cotransporters AT1G22150 73.745 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13242g00001 K17470 - gmx:100806204 882.478