Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13234g00001 ATGGTTTCAAGGTCATATTCAAACTTGTTAGATCTTACTTCCTGTGGCTCCCCAACTTTCGGTCGCGAGAAGAAAAGGCTGCCTCGAGTGGCGACTGTTGCCGGAGTTCTGTCTGAACTAGATGATGAGTCCAGCAATAATAGTGTTGGGTCTGATACTCCATCCTCAGTCTCTCAAGAGAGGATGATAATTGTAGGTAACCAGCTTCCACTAAGGGCACGCAGAAAAGACAATGGTACTTGGGAGTTCACATGGGATGAGGACTCACTTCTTTTGCAGCTGCAAGATGGTCTTGGGGATGATGTGGAAACTATCTATATTGGTTGTCTTAAAGAAGAGATTGAGCCGAGTGAGCAAGATGATGTTGCCCAGTACTTGCTGGACACTTTCAAATGCGTGCCCACCTTTCTCCCACCTGAGCTTTTCAGTAAATTCTACCATGGATTCTGCAAACAACATCTCTGGCCTTTATTTCACTACATGCTTCCGCTTTCGCCTGATCTTGGTGGTAGATTCGATAGGTCCCTTTGGCAGGCATATGTTTCTGTGAACAAGATATTTGCGGATAAAGTGATGGAAGTCATCAGCCCTGATGACGACTTTGTGTGGGTTCATGACTACCATCTGATGGTACTTCCAACATTTTTGAGAAAGAGATTTAACAGGGTTAGACTAGGATTCTTCCTTCACAGTCCCTTCCCTTCCTCTGAGATATACCGAACCCTTCCTGTCAGGGACGAACTTCTTAGAGCTCTTCTGAATTCTGACCTTATTGGGTTTCATACTTTTGATTATGCCAGGCATTTCCTCTCTTGTTGCAGTAGAATGCTTGGAATTTCTTACCAATCTAAGCGGGGTTACATTGGTCTTGAGTACTATGGAAGAACTGTAAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGTCAGCTCCAATCAGTCATGAGTCTTCCCGAGACAGAAAGCAAGGTTGCAGAGTTAAAAAGCCAGTTCAGAGATCAAACTGTGCTGCTCGGGGTGGATGACATGGATATCTTCAAAGGAATCAGCTTAAAACTTTTGGCCATGGAACAATTGCTTTTGCAACATCCTGATAAGAGGGGCAGAGTTGTGCTTGTCCAAATTGCAAACCCTGCAAGAGGCCGCGGAAAGGACGTGCAGGAGGTACAAAGTGAAACTTATGCCACGGTGAAGAGGATAAATAATACTTTTGGAAGGCCTGGATACACACCTGTAGTCTTGATTGATAGACCACTTCAGAGTTACGAGCGAATTGCTTATTATGTGATTGCTGAATGTTGCCTTGTTACAGCAGTGAGAGATGGGATGAACCTTATACCCTATGAATACATCATTTGTAGACAAGGAAGTGAGAAGATAGATGAGATCTTAGGGACAGACCCACTTACTCAAAAGAGGAGTATGCTGGTGGTGTCCGAATTCATTGGCTGCTCCCCTTCGTTGAGTGGGGCAATTAGAGTGAATCCGTGGAACATTGATGCTGTTGCCGAGGCTATGGATTCTGCACTGATGGTCCCAGAGGCTGAAAAGCAGATGCGGCATGAGAAACATTATAGGTATGTTAGTACACATGATGTTGCATATTGGGCGCGCAGCTTCTTGCAGGATCTGGAAAGGGCATGCAGAGATCATCTAAGGAGACGATGCTGGGGAATTGGTTTTGGTTTAGGCTTTCGAGTAATTGCTTTGGATCCAAACTTTAGAAAGCTATCGGTGGAACATATTGTTTCAGCTTACAAGAGGACGAAGCACCGAGCAATTCTTTTGGATTATGATGGTACTATGGTGCAGCCTGGATCGATGAGTACAACACCTAATGCTGAAGCCGTTGGCATCTTTAACATCTTGTGCAGGGACACCAAGAATTGTGTTTTCATCGTAAGTGGAAGGGAGAGAGGGACTCTTACTGAATGGTTTTCTTCTTGTGAAAGGATGGGAATTGCTGCAGAGCATGGTTATTTTGTGAGGACAAATCAAAATTCAGAATGGGAAACATGTGTTCCAGTACCCGATTTTGAGTGGAAACAGATTGCTGAGCCGGTTATGCAATTGTATATGGAAACAACTGATGGTTCTAACATAGAGGCCAAAGAAAGTGCCCTTGTTTGGAATTACGAGTATGCAGACAGAGACTTTGGTTCATGTCAAGCTAAGGAGCTTCTTGATCACCTGGAAAGTGTTCTTGCCAATGAGCCTGTCTCTGTTAAAAGTAGTCCAAACATTGTGGAAGTAAAACCTCAGGGTGTGAGTAAGGGTATTGTAGCAGAACGTCTTCTCTCAACAATGAAACAAAAAGGGGTGATTCCAGATTTTGTTCTATGCATTGGAGATGACAGATCAGACGAGGACATGTTTGGGGTGATAATGAATGCAAGGGCGTCACTGTCTCCAGTAGCTGAAGTGTTTCCATGCACTGTTGGTCAGAAACCTAGCAAGGCCAAGTATTACTTGGAAGACACAAGTGAGATTTTGAGAATGTTGCAAGGCCTTGCCAATGCTTCTGAGCACTCTACTAGAACTTCTTCCCAACCTTCTCATTAA 2562 0.4399 MVSRSYSNLLDLTSCGSPTFGREKKRLPRVATVAGVLSELDDESSNNSVGSDTPSSVSQERMIIVGNQLPLRARRKDNGTWEFTWDEDSLLLQLQDGLGDDVETIYIGCLKEEIEPSEQDDVAQYLLDTFKCVPTFLPPELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVRLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGISYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQSVMSLPETESKVAELKSQFRDQTVLLGVDDMDIFKGISLKLLAMEQLLLQHPDKRGRVVLVQIANPARGRGKDVQEVQSETYATVKRINNTFGRPGYTPVVLIDRPLQSYERIAYYVIAECCLVTAVRDGMNLIPYEYIICRQGSEKIDEILGTDPLTQKRSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVPEAEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDGTMVQPGSMSTTPNAEAVGIFNILCRDTKNCVFIVSGRERGTLTEWFSSCERMGIAAEHGYFVRTNQNSEWETCVPVPDFEWKQIAEPVMQLYMETTDGSNIEAKESALVWNYEYADRDFGSCQAKELLDHLESVLANEPVSVKSSPNIVEVKPQGVSKGIVAERLLSTMKQKGVIPDFVLCIGDDRSDEDMFGVIMNARASLSPVAEVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASEHSTRTSSQPSH 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13234g00001 853 Gene3D - 591 706 IPR023214 -
Vium13234g00001 853 Gene3D - 717 852 IPR023214 -
Vium13234g00001 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 312 - -
Vium13234g00001 853 SUPERFAMILY HAD-like 592 838 IPR036412 -
Vium13234g00001 853 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 549 - -
Vium13234g00001 853 NCBIfam trehalose-phosphatase 590 838 IPR003337 GO:0003824|GO:0005992
Vium13234g00001 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Vium13234g00001 853 Pfam Glycosyltransferase family 20 61 545 IPR001830 GO:0003824|GO:0005992
Vium13234g00001 853 Gene3D Glycogen Phosphorylase B; 54 312 - -
Vium13234g00001 853 Pfam Trehalose-phosphatase 595 828 IPR003337 GO:0003824|GO:0005992
Vium13234g00001 853 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 850 - -
Vium13234g00001 853 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 34 839 IPR001830 GO:0003824|GO:0005992
Vium13234g00001 853 NCBIfam HAD-IIB family hydrolase 594 796 IPR006379 -
Vium13234g00001 853 Gene3D Glycogen Phosphorylase B; 313 529 - -
Vium13234g00001 853 FunFam Alpha,alpha-trehalose-phosphate synthase 314 529 - -
Vium13234g00001 853 CDD HAD_TPP 593 829 - -
Vium13234g00001 853 CDD GT20_TPS 61 545 IPR001830 GO:0003824|GO:0005992
Vium13234g00001 853 FunFam Trehalose-6-phosphate synthase 2 675 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13234g00001 Vium-Chr13234 1106 5518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13234g00001 1 852 Trehalose Biosynthesis Gene Families AT4G17770 77.739 0.0 1424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13234g00001 K16055 - gmx:100782799 1652.88