Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13232g00001 ATGGGTTCATTCTCTGGCACTTGTGAAATTGTAGAAGCAAGGGATGACCTAAATACAGAGAAAGCTGCCGGGATGTATCAGTCCAATTCTGGATATAGCTTGGATGAAAAAAACCGGAAGCATCCTGTGCTGAAACAGGGATATAAGGATAATCTAGATGATGATATTAATAAGCTGTTTGAATCAATTACTCTTAAATCTTCATCAAGGGATTCTGGCCTTTTACAGGATGGTACAAGCCCTAAGATGAAAAGTTCATTGAAAAAGCCAATTACAGTGGGTGCTTCTCGGTCCCCACGAGTTGGATATTCTGAGCCTTTGACTTTGAAGCAGGCTTTAAGAGACCTATGTATATCTAAGGCATCAGAAATGGCTTCCATGAAAAGATTATCAAAGTCAACTGCTTCTCCAAGAATATCTGAGGTTGGGAAGATACAGACATTGTACAATTCAGTTGTAGTTGAAGGTAGACAATCTGGGCCTTCTAATGTTGAGAATAAAGGGAGTACAAGCGAAATATCTCTAGTGCCAGAAGAGAGCAGCTCACATGCCTTGGATAAAGCTTCCCAGTCTCATCCAACTGTTAAAAGCACATCACTAAGGCAAAATGTTCAATCTTCCAAAATTTCTGTTGCAACTACTGAAAATGGTACTGGGGCTTCATTGATAGGTGACTTGGCTAGTTCATCAAATAAAGTTGGGGTTCTATCGCAGTCTTTGGAACCTTCTCAAATAGAAAAACAAACATGTGCATCTTCTCCATCTAGTTGTAACACTAATGGAAGTAAGTTAGACTTGTCTGAAAATGCTTCTTCCTCTAACAAATTAGGAAATAAAGCATGTGTATCAAAGAATGGGCACAAAGATAGGTTACAAACAGTCTGTTCCTCATCTACTTCAGTAAATGGCAGCAGAGTGTGCAAATTGTCACGACATGCCCCTCGTACGGTCAAATCAATTATCAAGAACAAAAGTTTGGGTAAGAAAAAACTAAAGCAAGATTCCTTTTCTGCTGTATTTGATCCTACATCCAATGAAGTAAATAACCAGTCAGTTACTAGTACAACTCAACTTGTTTGTGAGAGATGCTGGTGTGCTATAGAAAACAACAAAGGTATTATATCATTGGACTCTACTAGTTCTGGAGATGGAATAAACTCTGTTAATGTGCACTCAGGCTCAGCACCAGCTGGCTGTAATAGCGCCAGAGAAGTTACAAAAGTGAAAAAGAATACCGTATTGAAAGAGCAACTTGAATTTTCACAAAGTTCAAAGAGTAGTCAAGGTGACTACAGTAGTAGTACAAGTACAAGTGATGAGAGTAATCTCAGTGGGGCTAGTTGTGGCAATAGGCCTCACATGTCAAAGGATGTTAGATGGGAGGCCATACGACATGCTCAAATGCAGCATGGAGTCTTGGGCTTGAGACACTTCAATCTTTTGAGGAAGTTAGGTTGTGGAGACATTGGAACTGTATATCTTGCTGAGCTAATTGGCAAAAGTTGTTTGTTTGCTATCAAGGTGATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAACTGAAAGAGAAATATTAAGGATACTGGATCATCCTTTTCTTCCGACACTGTATGGGCAGTTTACCTCAGATAATTTATCATGTCTGGTCATGGAGTATTGTCCCGGTGGTGATCTTCATGTTCTACGGCAGAAACAGCTTGGTAGAAGTTTTTCAGAGCCAGCAGCTAGGTTTTATGTAGCTGAAGTCCTTCTTGCTTTAGAGTACTTGCACATGCTTGGAGTGGTTTACCGTGATTTGAAGCCAGAAAACATTCTTGTTCGAGAAGATGGTCACATTATGCTGACAGATTTTGACCTTTCACTTAAGTGTGATGTTAGCCCGACGCTTCTTAAGTCATCTGATGTGGATCCTGCTAAGAATTCTGGTCCTTGTGCACAATCTAATTGCATTGAGCCATTTTGTATTGAACCATCCTGTCAAGTTCCATGCTTCAGCCCCAGACTCCTACCTCCTGCCGCAAAAACAAGGAAATTGAAAACAGATCTTGCTGCCCATCTCAGATCATTGCCACAGCTCGTGGCTGAACCCACTGACGCAAGATCAAATTCATTTGTTGGTACACATGAATATTTGGCGCCTGAGATAATCAAAGGAGAGGGACACGGAGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTATATGAGCTTTTATATGGCAGAACACCCTTTAAAGGTTGTAATAATGAAGAAACGTTAGCCAACGTGGTGTTGCAAGGTCTCAGGTTCCCTGATACCCCATTCGTTAGTTTCCAAGCGAGGGATCTCATTAGGGGGTTGTTGGTTAAAGAGCCTGAAAATCGTTTGGGTACAGAGAAAGGGGCTGCTGAGATAAAACAGCACCCATTCTTTGAAGGCCTTAATTGGGCCTTAATTCGTTGTGCTATCCCACCAGAACTTCCAGACTTGTGTGAATTTGGAGTTTCAGAGATGACTCCACAGTCCCAGTGCAAGGGTATTCAGTATGTAGAGTGTAATGCAGCAGGAGAGCAAGTGGAATTTGAGTTGTTTTAA 2589 0.4117 MGSFSGTCEIVEARDDLNTEKAAGMYQSNSGYSLDEKNRKHPVLKQGYKDNLDDDINKLFESITLKSSSRDSGLLQDGTSPKMKSSLKKPITVGASRSPRVGYSEPLTLKQALRDLCISKASEMASMKRLSKSTASPRISEVGKIQTLYNSVVVEGRQSGPSNVENKGSTSEISLVPEESSSHALDKASQSHPTVKSTSLRQNVQSSKISVATTENGTGASLIGDLASSSNKVGVLSQSLEPSQIEKQTCASSPSSCNTNGSKLDLSENASSSNKLGNKACVSKNGHKDRLQTVCSSSTSVNGSRVCKLSRHAPRTVKSIIKNKSLGKKKLKQDSFSAVFDPTSNEVNNQSVTSTTQLVCERCWCAIENNKGIISLDSTSSGDGINSVNVHSGSAPAGCNSAREVTKVKKNTVLKEQLEFSQSSKSSQGDYSSSTSTSDESNLSGASCGNRPHMSKDVRWEAIRHAQMQHGVLGLRHFNLLRKLGCGDIGTVYLAELIGKSCLFAIKVMDNEFLARRKKMPRAQTEREILRILDHPFLPTLYGQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLKCDVSPTLLKSSDVDPAKNSGPCAQSNCIEPFCIEPSCQVPCFSPRLLPPAAKTRKLKTDLAAHLRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGCNNEETLANVVLQGLRFPDTPFVSFQARDLIRGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCEFGVSEMTPQSQCKGIQYVECNAAGEQVEFELF 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13232g00001 862 PANTHER FLIPPASE KINASE 1-RELATED 218 831 - -
Vium13232g00001 862 Gene3D Transferase(Phosphotransferase) domain 1 558 627 - -
Vium13232g00001 862 MobiDBLite consensus disorder prediction 419 449 - -
Vium13232g00001 862 MobiDBLite consensus disorder prediction 419 450 - -
Vium13232g00001 862 MobiDBLite consensus disorder prediction 70 86 - -
Vium13232g00001 862 SUPERFAMILY Protein kinase-like (PK-like) 456 828 IPR011009 -
Vium13232g00001 862 FunFam Serine/threonine-protein kinase D6PK-like 476 561 - -
Vium13232g00001 862 Gene3D Phosphorylase Kinase; domain 1 476 557 - -
Vium13232g00001 862 Pfam Protein kinase domain 479 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13232g00001 862 Pfam Protein kinase domain 706 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13232g00001 862 ProSiteProfiles Protein kinase domain profile. 478 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13232g00001 862 FunFam serine/threonine-protein kinase D6PK-like 704 827 - -
Vium13232g00001 862 MobiDBLite consensus disorder prediction 70 89 - -
Vium13232g00001 862 Gene3D Transferase(Phosphotransferase) domain 1 702 824 - -
Vium13232g00001 862 MobiDBLite consensus disorder prediction 244 275 - -
Vium13232g00001 862 MobiDBLite consensus disorder prediction 157 206 - -
Vium13232g00001 862 FunFam serine/threonine-protein kinase D6PK-like 562 629 - -
Vium13232g00001 862 CDD STKc_phototropin_like 476 828 - -
Vium13232g00001 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672|GO:0006468
Vium13232g00001 862 SMART serkin_6 478 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13232g00001 Vium-Chr13232 2923 9826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13232g00001 1 862 AGC Kinase Gene Family AT2G36350 51.656 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium13232g00001 Pkinase 1.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13232g00001 - K08286 gmx:100813470 1474.14