Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13227g00001 ATGAGGAGAAAGTTTGTCACCATCAACCTCTATTCTCGATGCCGTCCGCCTCTGTCTGCTGTTTCCCACTATCTGTCGCTATCCGCTGCCGACCACTATCCATCGTTGTCTGCTACTGACCACTATCCATCGTTGTTCGCTGCCGACCACCGTCTACTGTCTTCCGTTGCCATTTGGCACCACAGTTTAGTCCGACAACTAGTGGATCTAGATCGTCTCCTTGAGCGAGATGTTTGTGAGGAGTTTCTTTGGTTACACGGGTTTGTNAAGAACATGAGTTCTGAAGACTTTAAACTTGCTGCTGAGCAGCTAAAGCATACTCGTCCAGAAGAAATGGCTGAGATTGGTGAGAAGATGGCCAATGCGTCTCCTGATGAAGTGGCAGCGATGCGATCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCTGCTGAGATGTTGAAGAAGCAGGGCAATGAACTTCATAGTCAAAGAAAGTTCAGTGAAGCTTTGAAGAAGTATACGCTTGCTAAAGAAAACATCAAAGAGATTCCATCTTTCCAAAGTAGAAAGCTTCTTTTGGCATGTTCTCTCAACTTGATGTCCTGTTACTTGAAGACAAGGCAATATAATGAGTGCATCAAAGAAGGTTCTGAGGTTTTGGCATATGACGCAACGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATACAAGGAACTAGGTCGACTAAATGATGCTGTTTCTGATCTGAGCAAGGCGCGTGAAGTGTCCCCTGATGATGATACAGTTGCAGAGCTTTTACGGGATACCAAGGAAAAATTGACGATGGGAGGTGGTGAGCAATTGACTAGTGGAGTAGTAATCGAAGAAATAACTGAAGAAGTCGAGGATGTACCTCCTAAAAGCTCTTTGGAACAAACAGCGGTTCAAAAAAAATCTGGTGACACCTCTAAGAGTACAAGTAATGCTAACAATGGAAATTCAAAATCAGATGCAGACAGTTTAGATGCATTGAGAAAGGATCCTGAAGCTGTCAGGTCATTCCAAAACTTCATTCAAAATACAAATCCTGCCACGCTGGCTTCTTTGAATGCTGGACAATTCAAAGATGTGTCCCCAGATATGATCAAAACCACCTCTGATGTAATTAGTAAGATGTCACCTGATGAACTGCAAAAAATGCTTGACATGGCTTCTTCATTTCAAGGGGACAACCAATTTTTAAGAGGAGGTCCCCCTGATTCTTTTAACCCAGGATCAATGCCTCCCAATGTGACACCTGACATGTTTAAAGCAGCAAGTGATATGATAAGTAAAATGCCAGCTGATGACCTCAAGAAGATGTTTGAAATGGCATCATCACTCAAAGGGAAAGAATCTATTCCATCAGCAGCAGCAGTAGATGAGATCCAAAGAAATGTTTATAAGTCGAACATCCCATCATCAAGTACTAGTGAAACTAGTCATTTTGGGGAATCAAGTTCTTCTAATAATGTGTTTTCAAATATGAGAAACGCTTCTCAGTCAAACTTTCCTTCCTCCAGTCCTGATCTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCCATGCGGCAGATGTTCACATCCATGATTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAGGCAGCAAAAGCTCAGAAAGCCGTCTCATCCATGTCACCAGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCAAGAAAGACAAAGAACTGGCTGCTAGGGAAGCCTGGAATGATCTTTGCAATATGCATGCTCATTTTGGCTATCATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG 1875 0.4288 MRRKFVTINLYSRCRPPLSAVSHYLSLSAADHYPSLSATDHYPSLFAADHRLLSSVAIWHHSLVRQLVDLDRLLERDVCEEFLWLHGFVKNMSSEDFKLAAEQLKHTRPEEMAEIGEKMANASPDEVAAMRSRVDAQIKYQLSAAEMLKKQGNELHSQRKFSEALKKYTLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTRQYNECIKEGSEVLAYDATNLKALYRRGQAYKELGRLNDAVSDLSKAREVSPDDDTVAELLRDTKEKLTMGGGEQLTSGVVIEEITEEVEDVPPKSSLEQTAVQKKSGDTSKSTSNANNGNSKSDADSLDALRKDPEAVRSFQNFIQNTNPATLASLNAGQFKDVSPDMIKTTSDVISKMSPDELQKMLDMASSFQGDNQFLRGGPPDSFNPGSMPPNVTPDMFKAASDMISKMPADDLKKMFEMASSLKGKESIPSAAAVDEIQRNVYKSNIPSSSTSETSHFGESSSSNNVFSNMRNASQSNFPSSSPDLQEQMRNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGVKLSPEEAAKAQKAVSSMSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAICMLILAIILHRLGFIGG 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13227g00001 624 ProSiteProfiles TPR repeat region circular profile. 222 255 - -
Vium13227g00001 624 SMART tpr_5 188 221 IPR019734 GO:0005515
Vium13227g00001 624 SMART tpr_5 145 178 IPR019734 GO:0005515
Vium13227g00001 624 SMART tpr_5 222 255 IPR019734 GO:0005515
Vium13227g00001 624 SUPERFAMILY TPR-like 138 267 IPR011990 GO:0005515
Vium13227g00001 624 MobiDBLite consensus disorder prediction 473 514 - -
Vium13227g00001 624 MobiDBLite consensus disorder prediction 288 329 - -
Vium13227g00001 624 MobiDBLite consensus disorder prediction 298 327 - -
Vium13227g00001 624 Gene3D Tetratricopeptide repeat domain 131 272 IPR011990 GO:0005515
Vium13227g00001 624 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 89 400 - -
Vium13227g00001 624 ProSiteProfiles TPR repeat profile. 222 255 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13227g00001 Vium-Chr13227 2063 8697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13227g00001 131 269 Calmodulin-binding Proteins AT3G25230 36.552 7.66e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13227g00001 - - vum:124821888 1188.33