Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1321g00001 AGTGTAGACATAGTGGAAGCAGAATCAAACTCAAACTCAACGGTTTCTTCAAAACCAACCAAACTGTCGACTTTTGTTTCAACTTGCGCTTATGCTTTTGTTTGCATTGCCAAAGCCTGGCACGGAATTGAAAAGGAGAAAAATAAGTTTGCTTGTGGGTTCAATGTGGATTGCAGGGCCAGGATGGAGCCTCCAATTCCTGAAAACTACTTTGGGAACTGTGTATGGGGGAAGATGGTGGTTGATAAGCCATCGGCATTTATAGAGAAAGAAGGGTTTGTTATTATTGCGAAAAGTATTCATAGTAAAATAAAAGAGATATTAGATAAGGGTGTTTTTCATGAAGCAGATGATCTTGGTCGTATATATGCAGCTTTGGTAAAAGAGAGAGTTGAAATGTTAGGAATTGCGGGGTCTAACCGTTTTGGGGTTTATGAGAATGATTTTGGTTGGGGAAAGCCTTCAAAGGTGGAGATAGCATCGGTGGATAGAGCCCTAACAATTGGATTGGCAGAGAACAGAGATGCGAAAGGCGGTGTTGAAATTGGGATTGTTCTGAAGAGACCAGTGATGGAATTATTTGGCACTTTGTTTCGTGGAGGATTGTCAAATGAGTGA 618 0.4094 SVDIVEAESNSNSTVSSKPTKLSTFVSTCAYAFVCIAKAWHGIEKEKNKFACGFNVDCRARMEPPIPENYFGNCVWGKMVVDKPSAFIEKEGFVIIAKSIHSKIKEILDKGVFHEADDLGRIYAALVKERVEMLGIAGSNRFGVYENDFGWGKPSKVEIASVDRALTIGLAENRDAKGGVEIGIVLKRPVMELFGTLFRGGLSNE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1321g00001 205 Gene3D - 3 204 IPR023213 -
Vium1321g00001 205 PANTHER - 18 204 - -
Vium1321g00001 205 Pfam Transferase family 6 194 - -
Vium1321g00001 205 SUPERFAMILY CoA-dependent acyltransferases 46 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1321g00001 Vium-Chr1321 59 681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1321g00001 56 194 Monolignol Biosynthesis Gene Families AT5G48930 21.918 2.70e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1321g00001 - - vum:124825818 415.231