Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13214g00003 ATGGGTTCCAAGAGACCACATGTGATCATGACACCGTCGACAACAGCTCCTGATAACTACCAACAAGACCCTTTCTCTGTTAATATTTCTGAACTCCCAACATCAAATTCAAATTTTGGCAACGTCTTCAACCCGTTTGAGAACACTCTTGTTAGCTCATCATCACGCAGAAGTTCCATGTCCAATCGCTCTTCTGGGAGCAAGAGCAACAACTCCATCCATGAAGTGAGTTTGAGCGGCTCGGCATCCAAATCCATTCCCGTTAGGTATGGCTCAAAGGGTGCAGATTCTGAAGGACTAAGCGTGTCTCAGAGGGAACTCAGAGATGAGGATGCGAGGTTAGTGTACATAAACGACCCTTTGAAAACGAATGAGACCTTTTTGTTTGCTGGAAACTCTATCCGCACGAGCAAATACTCCCTCCTCAGTTTCATTCCCAGGAATCTTTTTGAACAGTTTCACAGAATTGCTTACGTGTACTTTCTCATAATTGCCATTCTCAATCAGCTTCCTCAGCTAGCAGTTTTTGGAAGAGCTGTTTCGATCTTGCCACTGTCCTTTGTGCTGTTTGTCACAGCTGTGAAGGATGCGTATGAGGATTGGAGAAGGCACAACAGTGATAAAGTTGAGAACAATATGTTGGCATCGGTTTTGGTTGATGGAAACTTTTTGGAGAAGAGCTGGAGGGATGTTAGAGTTGGTGAGGTGATAAAGATCAAGGCAAACGAACCCATCCCCTGTGATATTGTGTTGCTCTCAACCAGTGATCCAACTGGGGTTGCATACGTGCAGACTATTAATCTAGATGGGGAGTCAAATTTGAAGACAAGGTATGCAAAGCAAGAGACGCATGGTAAGGAGGGGTTTGGTGGGGTGATCAAGTGTGAGAAACCCAATAGGAACATATATGGATTTCTGGCTAACATGGAAGTTGATGGCAAAAAGTTGTCACTTGGATCCTCCAACATTGTGCTTCGTGGATGTGAGCTCAAGAATACTACTTGGGCCATTGGTGTTGCTGCGTATTGTGGGAGTGAGACCAAGGCTATGCTGAACAACTCAGGAGCTCCTTCTAAGAGGAGCAGATTGGAGACACGCATGAATTTTGAGATCATTTGGCTCTCTTTCTTCCTCGTGGCATTGTGTACAATCACCTCAGTTTGTGCTGCTGTGTGGTTGAAGCGCCACAAGGATGAGTTGAATCTGTTACCATATTATAGGAAACTAGATTTTTCAGAGGGGGAAGTGGAAAGCTACGAATACTATGGATGGGGGTTTGAAGTTCTCTTCACATTCCTCATGTCAGTTATAGTGTTCCAGGTCATGATTCCCATTTCCTTGTACATTTCCATGGAGCTTGTGAGGGTTGGTCAGGCCTTCTTCATGATCCGAGACAACAGAATGTATGATGAGGAAACAAAGTCAAGGTTTCAGTGCAGAGCTTTGAACATTAATGAAGATTTGGGGCAGATTAAGTATGTTTTCTCGGATAAAACTGGCACACTAACTCAGAACAAGATGGAGTTTCAATGTGCAAGCATCTGGGGGGTTGATTACAGTTCTACGGAGAACAGCATGGAGGGTGATCAAGTTGAAAATTCTGTGGAAGTGGATGGAAAGGTCTTCAGACCAAAGATGAAGGTGAAAGTTAATCCAGAACTTTTGCAGCTAGCAAGAAGTGGATTTCTCAATTTGGAGGGAAAACGGATTCATGATTTCTTTCTAGCACTGGCAACCTGCAACACTATTGTGCCTATTGTTGTTGACTCGCCTGACCCTGATGTCAAACTGATAGATTACCAAGGAGAATCACCAGATGAACAAGCATTAGCTTATGCTGCTGCAGCCTATGGTTTTATGCTAATAGAACGAACGTCCGGCCATATAGTCATCGATATTCATGGACAAAGACGAAAGTTCAATGTTTTGGGTATGCATGAGTTTGATAGTGACAGGAAGAGGATGTCAGTTATATTGGGGTACTCTGACAATTCTGTGAAAGTGTTTGTCAAAGGAGCAGACACATCCATGCTTAATGTGATAGACAAGTCATTTAACATGGACTTAGTAAGAGCCACGGAAGCGCATCTTCACTCTTACTCTTCCATTGGTTTGAGGACACTTGTTATTGGAATGAGAGACTTGAATGCTTCAGAATTTGAGCAATGGCATGCATCCTTCGAGGCTGCAAGCACGGCTGTTTTTGGTAGGGCTGCTATGCTCCGCAAGGTTTCTAGCATTGTGGAGAACAGTCTCAGCATATTAGGAGCATCTGCCATTGAAGATAAACTGCAACAAGGTGTGCCTGAATCCATTGAGTCTCTAAGGATTGCAGGGATTAAAGTGTGGGTTCTGACTGGGGACAAACAAGAAACTGCCATATCCATTGGCTACTCCTCAAAGCTCCTTACAAGCAAAATGAATCAGATTATAATCAACAGCAACAACAGAGCAGCATGCAGAAAAAGTTTGCAAGATGCCCTTGTCATGTCTAAAAAGCTCACGTCCACATCTAGCGTTGCCAACAATTCTGGAGGAAGTTCTGAGGCAAATCCAATAGCCTTGATAATTGATGGTACCAGTCTTGTGCATATTCTTGACAGTGAGCTTGAAGAAGAGCTATTTCAACTTGCAAGTAGATGTTCTGTTGTTCTATGTTGCCGAGTTGCTCCACTGCAAAAGGCTGGCATCGTTGCCCTTGTGAAGAATAGGACATCAGACATGACTCTAGCCATTGGAGACGGTGCTAATGATGTCTCAATGATCCAAATGGCTGATGTTGGAGTTGGCATCAGTGGACAAGAGGGACGGCAAGCTGTAATGGCATCTGATTTTGCAATGGGGCAGTTTAGGTTTTTGGTTCCTCTCTTACTGATACATGGGCACTGGAATTACCAACGACTTGGTTACATGATTCTATACAATTTTTACAGAAATGCTGTTCTTGTTCTAGTCTTATTTTGGTATGTGCTCTACACTGCTTTCACTTTGACAACTGCCATAAATGAATGGAGCACGACGTTATACTCAATAGTCTACAGCTCAGTACCAACTATAGTTGTTGCTATTCTAGACAAGGATCTAGGTAAAAGGACACTCCTAAAGTACCCTCAACTTTACGGGGCAGGTCAGAGACATGAGGCCTACAACAAGAAACTGTTTGCCTTGACAATGTTAGATACTTTGTGGCAAAGCATGGTCATTTTCTGGGCACCCCTCTTTGCATATTGGAGCAGCACAGTTGATGTGTCAAGCATTGGAGACCTTTGGACTTTTGGGGTTGTTATTTTGGTGAATTTGCACTTGGCCATGGACGTTGTAAGGTGGTATTGGGTGACCCATGTTGCCATTTGGGGTTCTATTGTTGCAACTTTCATTAGTGTCATGATCATTGAAGCTTTTCCCAATACTCCTGGCTATTGGGCCTTCTTCAATGCTGCAGGAACTGGATTGTTCTGGTTATTGTTGCTTGGAATCATAATAGCAGCATTGCTTCCACGTTTGGTTGTAAAATATGTTTATGAATATTATTTTCCCAATGATATTCAGATTTGTAGAGAAGCTGAGAAGATTGAGTATGAGAGAGCTGTTGAAAGTGCAGCAATAGAGATGCTTCCTATCTCAAACATTCCACCAAGATAA 3642 0.4311 MGSKRPHVIMTPSTTAPDNYQQDPFSVNISELPTSNSNFGNVFNPFENTLVSSSSRRSSMSNRSSGSKSNNSIHEVSLSGSASKSIPVRYGSKGADSEGLSVSQRELRDEDARLVYINDPLKTNETFLFAGNSIRTSKYSLLSFIPRNLFEQFHRIAYVYFLIIAILNQLPQLAVFGRAVSILPLSFVLFVTAVKDAYEDWRRHNSDKVENNMLASVLVDGNFLEKSWRDVRVGEVIKIKANEPIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETHGKEGFGGVIKCEKPNRNIYGFLANMEVDGKKLSLGSSNIVLRGCELKNTTWAIGVAAYCGSETKAMLNNSGAPSKRSRLETRMNFEIIWLSFFLVALCTITSVCAAVWLKRHKDELNLLPYYRKLDFSEGEVESYEYYGWGFEVLFTFLMSVIVFQVMIPISLYISMELVRVGQAFFMIRDNRMYDEETKSRFQCRALNINEDLGQIKYVFSDKTGTLTQNKMEFQCASIWGVDYSSTENSMEGDQVENSVEVDGKVFRPKMKVKVNPELLQLARSGFLNLEGKRIHDFFLALATCNTIVPIVVDSPDPDVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGQRRKFNVLGMHEFDSDRKRMSVILGYSDNSVKVFVKGADTSMLNVIDKSFNMDLVRATEAHLHSYSSIGLRTLVIGMRDLNASEFEQWHASFEAASTAVFGRAAMLRKVSSIVENSLSILGASAIEDKLQQGVPESIESLRIAGIKVWVLTGDKQETAISIGYSSKLLTSKMNQIIINSNNRAACRKSLQDALVMSKKLTSTSSVANNSGGSSEANPIALIIDGTSLVHILDSELEEELFQLASRCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAVLVLVLFWYVLYTAFTLTTAINEWSTTLYSIVYSSVPTIVVAILDKDLGKRTLLKYPQLYGAGQRHEAYNKKLFALTMLDTLWQSMVIFWAPLFAYWSSTVDVSSIGDLWTFGVVILVNLHLAMDVVRWYWVTHVAIWGSIVATFISVMIIEAFPNTPGYWAFFNAAGTGLFWLLLLGIIIAALLPRLVVKYVYEYYFPNDIQICREAEKIEYERAVESAAIEMLPISNIPPR 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13214g00003 1213 Pfam Phospholipid-translocating ATPase N-terminal 115 181 IPR032631 -
Vium13214g00003 1213 SUPERFAMILY HAD-like 490 967 IPR036412 -
Vium13214g00003 1213 FunFam Phospholipid-transporting ATPase 599 732 - -
Vium13214g00003 1213 ProSitePatterns E1-E2 ATPases phosphorylation site. 497 503 IPR018303 -
Vium13214g00003 1213 Gene3D - 474 491 - -
Vium13214g00003 1213 CDD P-type_ATPase_APLT_Dnf-like 131 1072 - -
Vium13214g00003 1213 FunFam Phospholipid-transporting ATPase 751 952 - -
Vium13214g00003 1213 SFLD p-type atpase 479 963 IPR044492 -
Vium13214g00003 1213 NCBIfam phospholipid-translocating P-type ATPase 129 1187 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium13214g00003 1213 Pfam Cation transport ATPase (P-type) 590 678 - -
Vium13214g00003 1213 SUPERFAMILY Calcium ATPase, transmembrane domain M 129 1179 IPR023298 -
Vium13214g00003 1213 Gene3D - 492 504 IPR023214 -
Vium13214g00003 1213 Pfam Phospholipid-translocating P-type ATPase C-terminal 940 1180 IPR032630 -
Vium13214g00003 1213 Gene3D - 185 352 - -
Vium13214g00003 1213 NCBIfam HAD-IC family P-type ATPase 427 521 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium13214g00003 1213 NCBIfam HAD-IC family P-type ATPase 883 998 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium13214g00003 1213 Gene3D - 600 731 IPR023299 GO:0000166
Vium13214g00003 1213 SUPERFAMILY Calcium ATPase, transduction domain A 212 349 IPR008250 -
Vium13214g00003 1213 Gene3D - 751 952 IPR023214 -
Vium13214g00003 1213 SFLD Haloacid Dehalogenase 479 963 - -
Vium13214g00003 1213 MobiDBLite consensus disorder prediction 54 80 - -
Vium13214g00003 1213 Gene3D - 505 530 IPR023299 GO:0000166
Vium13214g00003 1213 FunFam Phospholipid-transporting ATPase 187 352 - -
Vium13214g00003 1213 PRINTS P-type cation-transporting ATPase superfamily signature 495 509 - -
Vium13214g00003 1213 PRINTS P-type cation-transporting ATPase superfamily signature 912 931 - -
Vium13214g00003 1213 MobiDBLite consensus disorder prediction 8 25 - -
Vium13214g00003 1213 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 501 765 IPR023299 GO:0000166
Vium13214g00003 1213 PRINTS Sodium/potassium-transporting ATPase signature 989 1009 - -
Vium13214g00003 1213 PRINTS Sodium/potassium-transporting ATPase signature 488 509 - -
Vium13214g00003 1213 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 104 1192 - -
Vium13214g00003 1213 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13214g00003 Vium-Chr13214 27798 33286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13214g00003 60 1213 Primary Pumps ATPases AT5G04930 66.954 0.0 1646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13214g00003 K14802 - gmx:100813982 2047.32