Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1320g00007 ATGGGTTCCAATGGTAGCAAAGCCACTCCTTCTTCTCCTTCTTCGTCTTCTTCGTCGGGGAGTTTAAGGAAGGGTCGATCTAAGGGCTTTAGAGTTTTTCCATCTTATTGTCTTGGAACTACTTCTGGTTCTCACGACAGTGATAATGCAGACCAGGCTTGTGATCATAATAAAGTAAATGGCAGTGATATTACATATGCTAATGGCAATGTAACAAATTCGCATGAGGTGAAAACAGCGTCATTTACAAAGGTTAAAGCTAGTGAAATAACTTGTATGCCTTCTAACATTGACATTCATGAATGGGGAGAAACAAGCATCCCCAACACCTCATCCAGAACTGCTAGCAGCTCTAGCCATAATTCTTCAACCCATTCCTTGAACCCTACAAGTCATTTCCTTTCTCAGCTTAGCCTCATTCCAGGTAGTGTAAGCTTCAGACTTAGCCGAACCACCAGTTTGGGGTCATCAAGGCCTTGTCCTGTTTCTTCTGCAAGTCTCTCAACAATTGACAATGAAGATGAGTGTAATCTCCACCCTAGATCTCCTGGAAGTTCGATTAACAGAAGAGAAGCACTACAAGGCAATGACCTGCTTCATGCATCTGTTTTCAATCAAATACATGTACAATCTCATGAAGATGCTTCTAGTAATTTAAGGTCTAGTGTCCTTACATCAGGTACACTTGGAAACTTGCAGAGAAATCTCACAGATGGAGTTCCCATAAGAGAAGGGCTGGATGTGAACTTATTTTCTCCAAGAATTCAAACAGAGACAGAAATTGATGACACTAGAAATATTGATCAACGAAATGGTGCTCGAGAATCAGTTGAACAGAATGTTCATTTTAGCCGAACTTTAAGTGTTGGAAGACTTCATGACAGAGTTCTTCGTAGAACAACATTTTCAGACCTCACCTTTTTCCCTTTGCAGCAGGAAAGAGAGCTGAGAGATGCTAGCCACCATAGCCAGGATATTGACAGGCAATCGCTGGAGGGAGATTCAAGAGTGTCATCATCTGATCACACGACCGTTAGTTCTTCTACATCTAGCATGTCTAACTCCATGTTTGGTATCCAAGACTACGAGGATGATACTTCACGATTGAGAGAAGTTAGGTATCAGGATCTTCTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATGCGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGATAGATCATGTATCTTGTCTGGTCAACATAGAAATGGGCATTGTACATGCCGAATCAATAATCGAAACACTAATTCAAATGATGATACCGGTGCCAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTTGTTTTATCTTCCCGGCCATCTGTATCTTGTAGTGGATCTGTTCCTGCGCCTAATGATGTTGTTGATTCCTTGCCTGTCAAGTTATATGAGAAGTTGCACAAGCATCAAGAGGACGGTGCTCAATGCTATATATGCCTCGTGGAGTATGAGGATGGAGACAACATGAGAGTACTTCCATGCCATCACGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGCAGATTCACAGGGTATGTCCACTTTGTAGAGGAGACATATGCATATCCGATTCAACGCCAACAGAGAACAAGAGTGTGTAG 1710 0.4222 MGSNGSKATPSSPSSSSSSGSLRKGRSKGFRVFPSYCLGTTSGSHDSDNADQACDHNKVNGSDITYANGNVTNSHEVKTASFTKVKASEITCMPSNIDIHEWGETSIPNTSSRTASSSSHNSSTHSLNPTSHFLSQLSLIPGSVSFRLSRTTSLGSSRPCPVSSASLSTIDNEDECNLHPRSPGSSINRREALQGNDLLHASVFNQIHVQSHEDASSNLRSSVLTSGTLGNLQRNLTDGVPIREGLDVNLFSPRIQTETEIDDTRNIDQRNGARESVEQNVHFSRTLSVGRLHDRVLRRTTFSDLTFFPLQQERELRDASHHSQDIDRQSLEGDSRVSSSDHTTVSSSTSSMSNSMFGIQDYEDDTSRLREVRYQDLLEHRSNFLERRRRMRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRINNRNTNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSCSGSVPAPNDVVDSLPVKLYEKLHKHQEDGAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKQIHRVCPLCRGDICISDSTPTENKSV 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1320g00007 569 MobiDBLite consensus disorder prediction 1 27 - -
Vium1320g00007 569 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 565 - -
Vium1320g00007 569 Pfam Ring finger domain 510 553 IPR001841 -
Vium1320g00007 569 MobiDBLite consensus disorder prediction 316 335 - -
Vium1320g00007 569 MobiDBLite consensus disorder prediction 102 128 - -
Vium1320g00007 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 557 IPR013083 -
Vium1320g00007 569 MobiDBLite consensus disorder prediction 1 24 - -
Vium1320g00007 569 FunFam Putative RING zinc finger domain superfamily protein 480 558 - -
Vium1320g00007 569 MobiDBLite consensus disorder prediction 316 359 - -
Vium1320g00007 569 SMART ring_2 511 552 IPR001841 -
Vium1320g00007 569 MobiDBLite consensus disorder prediction 336 359 - -
Vium1320g00007 569 SUPERFAMILY RING/U-box 489 560 - -
Vium1320g00007 569 ProSiteProfiles Zinc finger RING-type profile. 511 553 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1320g00007 Vium-Chr1320 56326 60842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1320g00007 242 560 C3H Transcription Factor Family AT5G45290 60.303 3.11e-113 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1320g00007 - - gmx:100812272 835.099