Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1320g00002 ATGCCCGCTCAGAAGCGTTCCTTCCCTGATTCTCCTCACGATCACCACCGTCACACCAAACATCACCACCAAGAAAAAACCGAAGAAGAAGAAGATGCACAACAACAAGAACAGGATAATTATGAATCAAACGGCTCAGATTCTCACCGCCCTCCGTCTTCTCCCTCCGAAGACAATTCCGAATTTGTTTTTGTAGAGCTTCTCGAAATACGTAAAGAAGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAGACACGAACAGTTATGGAATGCTTGCACCGGTTTTGCAGAGAATGCATTGACAAGTCGATGCGAATGGGGAACAATGAATGCCCGGCTTGTCGGACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCTCTGATTGCAGCTTTATATCCAGACATTGAGAAGTACGAGGAAGAGGAGCTTGAGTTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGACAATCAGAAGCACTGGTTAAGAGACGCAGAGATACACCAGGTTCATTTGTAACAAGAGCACAGCGCAATCAACGAAATGTCCTTTCTAGGAGACAAAACCAAGTAATGGATAATCAAGGATCTGAGGATAATGAGGATGAAAATGATAACAATGAAAAGGACTCATCTTCCACGGATGAGCGATGTACAGAAATTAGGCAGAGAAGGCGAAAGAGGCGGACCCGAGTTCGCCCTTCTCAGCCATCATCATCGACAGCAAGTCCTGACAGAGGATGCATAGAAAGTGATGTGGACATAAGAGAGAATCGAGGAATTTCTTCTAGACCGTTGTCAAAACCTCAAAAGCTAACATGGGGGAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAGTGGCAATGGTATCAATAGCAAAAGTGCCCGCAGTAGCCGCTTGGCGAAGTTAGTTGATTATCTCCGTAATTTGAATGAAAACACCGATGAGTTAGATGTTCATCTCATTCTTTTCTCTCTGGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGACCAACTTTGTCAGTGAAGCACCTTTGTGAGTATGTTGCTGGCCAGACATCTTTGCCAATTGAAGAAATTGAGATATTGGCAGTTAAAGGATGCTGCAGTACAGTTTATGAAAAGCCATTTGACGAGATTTCATCCTTTGATGAGCAAACGGCACTGATAATAGATCCTAGCAAAGATGAACTGGAAACTCTGCAAGGGCATGAATCTTTGACAGAACTTAAATCCAAATGCATATCTCAAAGGGCGCATATGATTCTGGCATACAGGCGGAAGGAGTGA 1365 0.4425 MPAQKRSFPDSPHDHHRHTKHHHQEKTEEEEDAQQQEQDNYESNGSDSHRPPSSPSEDNSEFVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEDKNRNKLIQASIAKVVQRQSEALVKRRRDTPGSFVTRAQRNQRNVLSRRQNQVMDNQGSEDNEDENDNNEKDSSSTDERCTEIRQRRRKRRTRVRPSQPSSSTASPDRGCIESDVDIRENRGISSRPLSKPQKLTWGRGGFRSHTRHGSGSGNGINSKSARSSRLAKLVDYLRNLNENTDELDVHLILFSLDKQSTPSLQQPHLCCRPTLSVKHLCEYVAGQTSLPIEEIEILAVKGCCSTVYEKPFDEISSFDEQTALIIDPSKDELETLQGHESLTELKSKCISQRAHMILAYRRKE 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1320g00002 454 Coils Coil 145 165 - -
Vium1320g00002 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 139 IPR013083 -
Vium1320g00002 454 ProSiteProfiles Zinc finger RING-type profile. 76 116 IPR001841 -
Vium1320g00002 454 MobiDBLite consensus disorder prediction 173 314 - -
Vium1320g00002 454 CDD RING-HC_RING1-like 73 138 - -
Vium1320g00002 454 MobiDBLite consensus disorder prediction 1 59 - -
Vium1320g00002 454 SMART ring_2 76 115 IPR001841 -
Vium1320g00002 454 MobiDBLite consensus disorder prediction 189 212 - -
Vium1320g00002 454 MobiDBLite consensus disorder prediction 38 59 - -
Vium1320g00002 454 PANTHER OS11G0578200 PROTEIN 1 453 IPR044592 -
Vium1320g00002 454 Coils Coil 24 44 - -
Vium1320g00002 454 ProSitePatterns Zinc finger RING-type signature. 92 101 IPR017907 -
Vium1320g00002 454 SUPERFAMILY RING/U-box 65 147 - -
Vium1320g00002 454 Pfam Zinc finger, C3HC4 type (RING finger) 75 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1320g00002 Vium-Chr1320 28252 34258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1320g00002 69 139 C3H Transcription Factor Family AT3G23060 35.135 4.95e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1320g00002 K10695 - gmx:100819311 678.322