Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium131g00007 ATGGCAATGGCAATGGCTCTGACATACTTGCCGTTGCTTCTTTTCTCTCTGTGGACGGTGGTGTTAACCGAAACGGACCCGAACGATGTGGGGATTCTGAACAGTTTTCGAAGAGGTTTGAAGAACAAAGAGCTCTTACCGTGGCCGGAAGAAGGAGGAGACCCGTGTGGGAATCCGCCATGGAAGTACATCTTCTGCAATGGAAACAGAGTTTCTCAGATTCAGACCAAGGACTTGGGTCTGGTGGGCCCGCTACCCTCCAACTTCAACAAGCTTTCAATGTTGGAGAATCTGGGTCTGCAGAACAACAACCTCACCGGGCCCTTACCCTCCTTCAATGGCTTGTCAAACTTGAAGTACGCATTTCTCAACCGCAACGGGTTTGAATCCATTCCCGGAGATTTTTTCCGGGGGCTTCGGAGTCTGCAGGTGTTGGCTTTGGATTACAATAATCTCAATGCCTCTTCTGGTGGCTGGGTGCTTCCTCAAACTTTGGAAGATTCGGCGCAGTTGAGGAACTTCTCTTGCATGAGCTGCAACTTGGTGGGTCCTATTCCTGCGTTTCTCGGCTCTTTGGCTTCGCTGGAGGTGCTGCAGCTCTCCGGGAACAGCTTGACCGGGAAGATTCCGGCGGAATTGAACACCGTTCCGGCGTTGCGGATTCTCTGGCTGAATAACCAGCGTGGCGATGGACTTACTGGGACAATTGAAGTTGTTGCGAGCATGATTTCGTTGACGAGTTTGTGGCTTCACGGGAATAAGTTTAGCGGGAGTATTCCGATGAACATTGGGGATTTGGTCTCGCTGAGGGATTTGGATCTTAATGGGAATGAGCTTGTTGGGTTGATTCCGCGTGGTTTGAGTGGGATGAAGTTGGAGCGGTTGGATTTGAATAATAACCACTTCATGGGTCCGATCCCTGATTTTGCAGCGGATAAAGTGAGTTTTGAAAGCAATGATTTTTGCTTGTCGAAGCCTGGGGCTATGTGTGCGTTTGAGGTGATGGCGCTGTTGGATTTTCTTGGGGGGTTGGGTTACCCTCAGATTTTGGTTGATTCGTGGAGTTGCAATAATCCGTGTGATGGGCCATGGCTGGGGATAAAGTGCAATGGGGATGGAAAGGTGGAAATGATTATTTTGAATAACTTTAACCTTAGTGGTACTTTGAGTCCTTCTGTTGCCAAGTTGGATTCTCTTGTTGGAATAAGATTGGGAGGTAACGATATCAGTGGTAGGATACCCAGTAATTGGACTAGTTTGAGATCATTGACGTTGTTGGATCTGAGTGGTAATAACATTTCCCGTCCCTTGCCGAGTTTCGGGAAAGGGATGAAGCTTGTGATTGATGGGAATTCTCCGTTACGTGGTCCCCCAGAAGTTTCTCTTTCTCCAACTGGTTCTGTTTCTGGTTCTGGCAAGGTTGAACCTCCTTCATCTGATAAGCGTAATCCTAATCCATCTGAAGACTCTAGTCCCAATCAAAAGTCTGACAGTGTCTCTCTTGAGTCAAATAATTCCAGAAGGAAAGGATTGGTTACACTTGTGGCTCCTATTGCAGGTGTTGCAGCTGCGGCTTTTGTTCTCATTCCGCTTTCTGTGTATTGTTTCAGGAAGAGAAACGGTGTCTCTGAGAAAGCAGGGTCTCTGGTGATTCACTCCAGAGATCCTTCTGATTCGAACAATTTGCTGAAGGTTGTAATTGCTAACGACGGTAATGGAAGTGTTTCCACAGTGACTGGCACTGGGTCTGGGACTCTAAATGGAAGTGGGGAATCTCATGTCATTGAATCTGGGAACCTTGTGATATCGGTTCAGGTTCTTCGAAATGTGACCAAGAATTTTGCACGGGAGAATGAGCTTGGGCGCGGTGGATTTGGAGTAGTTTACAAGGGAGAATTGGATGATGGGACTAAGATTGCGGTGAAAAGAATGGAATCGGGTGTCATTACCAGCAAGGCCTTGGATGAGTTCCAGTCTGAGATTGCAGTTCTATCGAAAGTCAGGCACCGGCATTTGGTATCTCTTTTGGGTTATTCAGTTGAAGGTAATGAGAGGATTCTAGTTTATGAGTATATGCCACAAGGGGCTCTCAGTATGCATCTGTTCCATTGGAAGAGCTTGCAACTGGAGCCACTCTCTTGGAAGAGGAGGCTCAATATCGCCTTGGATGTTGCTAGAGGAATGGAATATCTTCATAGCCTGGCACATCAGATCTTCATTCACAGAGATCTTAAATCATCAAATATTTTGCTTGGGGATGACTTTAGAGCAAAAGTCTCCGATTTTGGATTGGTAAAACTTGCCCCTGATGGCAAAAAATCTGTAGTGACCAGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACAGGAAAAGTTACCACCAAAGCAGATGTTTTCAGTTTCGGCGTTGTTCTAATGGAGCTGTTAACTGGATTAATGGCACTTGATGAAGATAGACCTGAGGAAAGCCAGTACTTGGCATCGTGGTTCTGGCATGTAAAATCAGACAAGGAGAAACTAATGGCTGCTGTTGACCCTGCCCTTGACATAAAGGAAGAGATGTTCGATATTGTCTCCATCATTGCCGAGTTAGCTGGGCACTGCACTGCCAGGGAACCAAACCAAAGGCCAGATATGAGTCATGTTGTGAATGTTCTTGGACCGCTTGTTGAGAAATGGAAACCATTCGATGATGAGACTGAGGAGTATTCTGGCATCGACTATAGTCTTCCCCTTAACCAAATGGTAAAGGATTGGCAAGAGACAGAAGGGAAGGATTTGAGCTATGTGGACCTACAAGACAGTAAGAGCAGTATCCCTGCAAGACCTACTGGGTTTGCAGAGTCTTTCACATCTGTTGATGGCCGCTGA 2883 0.4665 MAMAMALTYLPLLLFSLWTVVLTETDPNDVGILNSFRRGLKNKELLPWPEEGGDPCGNPPWKYIFCNGNRVSQIQTKDLGLVGPLPSNFNKLSMLENLGLQNNNLTGPLPSFNGLSNLKYAFLNRNGFESIPGDFFRGLRSLQVLALDYNNLNASSGGWVLPQTLEDSAQLRNFSCMSCNLVGPIPAFLGSLASLEVLQLSGNSLTGKIPAELNTVPALRILWLNNQRGDGLTGTIEVVASMISLTSLWLHGNKFSGSIPMNIGDLVSLRDLDLNGNELVGLIPRGLSGMKLERLDLNNNHFMGPIPDFAADKVSFESNDFCLSKPGAMCAFEVMALLDFLGGLGYPQILVDSWSCNNPCDGPWLGIKCNGDGKVEMIILNNFNLSGTLSPSVAKLDSLVGIRLGGNDISGRIPSNWTSLRSLTLLDLSGNNISRPLPSFGKGMKLVIDGNSPLRGPPEVSLSPTGSVSGSGKVEPPSSDKRNPNPSEDSSPNQKSDSVSLESNNSRRKGLVTLVAPIAGVAAAAFVLIPLSVYCFRKRNGVSEKAGSLVIHSRDPSDSNNLLKVVIANDGNGSVSTVTGTGSGTLNGSGESHVIESGNLVISVQVLRNVTKNFARENELGRGGFGVVYKGELDDGTKIAVKRMESGVITSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGNERILVYEYMPQGALSMHLFHWKSLQLEPLSWKRRLNIALDVARGMEYLHSLAHQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEDRPEESQYLASWFWHVKSDKEKLMAAVDPALDIKEEMFDIVSIIAELAGHCTAREPNQRPDMSHVVNVLGPLVEKWKPFDDETEEYSGIDYSLPLNQMVKDWQETEGKDLSYVDLQDSKSSIPARPTGFAESFTSVDGR 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium131g00007 960 Gene3D Transferase(Phosphotransferase) domain 1 692 910 - -
Vium131g00007 960 FunFam Receptor-like kinase TMK4 27 327 - -
Vium131g00007 960 Gene3D Ribonuclease Inhibitor 332 455 IPR032675 -
Vium131g00007 960 MobiDBLite consensus disorder prediction 462 504 - -
Vium131g00007 960 SMART LRR_typ_2 420 443 IPR003591 -
Vium131g00007 960 SMART LRR_typ_2 266 289 IPR003591 -
Vium131g00007 960 SMART LRR_typ_2 139 168 IPR003591 -
Vium131g00007 960 SMART LRR_typ_2 192 216 IPR003591 -
Vium131g00007 960 SMART LRR_typ_2 115 138 IPR003591 -
Vium131g00007 960 MobiDBLite consensus disorder prediction 453 504 - -
Vium131g00007 960 SUPERFAMILY Protein kinase-like (PK-like) 592 890 IPR011009 -
Vium131g00007 960 CDD STKc_IRAK 620 893 - -
Vium131g00007 960 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Vium131g00007 960 Pfam Leucine rich repeat N-terminal domain 335 370 IPR013210 -
Vium131g00007 960 PANTHER OSJNBA0070M12.3 PROTEIN 12 960 - -
Vium131g00007 960 SMART serkin_6 614 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium131g00007 960 FunFam receptor protein kinase TMK1 692 909 - -
Vium131g00007 960 MobiDBLite consensus disorder prediction 940 960 - -
Vium131g00007 960 FunFam receptor protein kinase TMK1 576 691 - -
Vium131g00007 960 SUPERFAMILY L domain-like 26 307 - -
Vium131g00007 960 Pfam Protein tyrosine and serine/threonine kinase 617 890 IPR001245 GO:0004672|GO:0006468
Vium131g00007 960 Gene3D Ribonuclease Inhibitor 27 328 IPR032675 -
Vium131g00007 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
Vium131g00007 960 SUPERFAMILY L domain-like 332 444 - -
Vium131g00007 960 Gene3D Phosphorylase Kinase; domain 1 583 691 - -
Vium131g00007 960 ProSiteProfiles Protein kinase domain profile. 614 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium131g00007 960 ProSitePatterns Protein kinases ATP-binding region signature. 620 642 IPR017441 GO:0005524
Vium131g00007 960 FunFam Leucine-rich repeat receptor-like kinase 332 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium131g00007 Vium-Chr131 43053 46938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium131g00007 83 927 Receptor kinase-like Gene Family AT1G55610 30.187 7.57e-79 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vium131g00007 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium131g00007 K00924 - gmx:100781857 1558.89