Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1319g00021 ATGGGTTTTCGTTTAGCTGGTATCAGAAAGATGTCTCTTACAGCTATTCAAGCATCTTCAAAAGCCATGGATGTGCCAAAGGGCTACCTTCCAGTCTATGTTGGAGAGAAAATGAAGAGGTTCTTCATCCCTGTATCATATTTGAACCAACCTTCTTTTCAAGATTTGTTGAGTCAAGCTGAGGAAGAATTTGGGTATAACCATCCAATGGGTGGTCTCACAATTCCTTGCAGAGAAGATGTATTCTTAGATACCACCTCTCGCTTGAATAGGTGCTAG 279 0.4122 MGFRLAGIRKMSLTAIQASSKAMDVPKGYLPVYVGEKMKRFFIPVSYLNQPSFQDLLSQAEEEFGYNHPMGGLTIPCREDVFLDTTSRLNRC 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1319g00021 92 Pfam Auxin responsive protein 14 87 IPR003676 GO:0009733
Vium1319g00021 92 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 15 89 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1319g00021 Vium-Chr1319 108052 108457 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1319g00021 14 82 Calmodulin-binding Proteins AT3G43120 49.275 1.21e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1319g00021 K14488 - gmx:100795597 166.777