Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1319g00018 ATGGGTTTTCGTCTACCTGGTATTAGAAGGGCATCTGCAAATCAAGCATCTTCAAAAGCTGTGGAGGTGCCAAAGGGCTATCTTGCAGTCTATGTTGGAGAAAAAATGAAGCGGTTTGTGATTCCAATATCATACTTGACCCAACCTTCGTTCCAGGACTTGTTGAGTCAAGCTGAGGAAGAGTTTGGATATGATCATCCAATGGGTGGTCTTACAATTCCCTGCAGTGAAGATTTCTTCCAAGAAATAACTTCACGATTGAATAAGCTATAA 273 0.4139 MGFRLPGIRRASANQASSKAVEVPKGYLAVYVGEKMKRFVIPISYLTQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDFFQEITSRLNKL 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1319g00018 90 Pfam Auxin responsive protein 12 86 IPR003676 GO:0009733
Vium1319g00018 90 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 15 87 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1319g00018 Vium-Chr1319 98606 99243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1319g00018 22 81 Calmodulin-binding Proteins AT3G43120 55.000 4.03e-19 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1319g00018 - K14488 gmx:100817347 160.999