Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1319g00016 ATGGCCATTAGAAAATCAAACAAGCTTCCACAACATGCAGTCTTGAAGCAGATCCTTAAGAGGTGTTCAAGCCTAGGAAAGAAAAACGGGTACGATGATGATGGCCACCCCGGTGATGTCCCAAAAGGCCATTTTGCTGTTTATGTGGGTGAAAACAGAACTAGGCACATTGTGCCAATCTCATTCCTCGCTCACCCCGAGTTCCAATCCCTCCTTCGACAAGCTGAAGAAGAGTTTGGCTTCGATCACGAGATGGGTCTCACTATTCCTTGCGAAGAAGTTGTCTTCAGGTCTCTAACATCCTCGTTAAGATGA 315 0.4635 MAIRKSNKLPQHAVLKQILKRCSSLGKKNGYDDDGHPGDVPKGHFAVYVGENRTRHIVPISFLAHPEFQSLLRQAEEEFGFDHEMGLTIPCEEVVFRSLTSSLR 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1319g00016 104 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 38 103 IPR003676 GO:0009733
Vium1319g00016 104 Pfam Auxin responsive protein 27 103 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1319g00016 Vium-Chr1319 85454 86211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1319g00016 19 99 Calmodulin-binding Proteins AT3G43120 49.383 1.73e-20 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1319g00016 K14488 - gmx:100790342 204.142