Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1319g00015 ATGTCGCCGTCGACGACTGGGAACTGCAGCAAAATCCGGCGCATTGTGCGCGTGCGGCAAATGCTTCTCCGGTGGCGGAGGAATGCGCGGCTGGCGGCGTCGGACGTTCCGGCGGGACACGTGGCGGTGTGCGTGGGGCCCAGCCGGAGGAGGTTCATCGTGCGCGCCAACTACCTTAATCATCCGATCTTCAAGACGCTTCTCGCGAAAGCGGAAGAGGAATACGGTTTCTGCAACCACGGTCCTCTCGCTATTCCTTGTGACGAGTCTCTGTTCGAAGAGCTTCTCCGGGTCGTGGACCGACCCGTACCCGGATTGTACACGCTCGAGGATTTGAGGAGACGGTGCCACGTGGATGTGTCGGGTGGCAACTCTGAGTCGTGGCCGTTGCTTCGTGATGAACTGATCTGCTGA 414 0.6039 MSPSTTGNCSKIRRIVRVRQMLLRWRRNARLAASDVPAGHVAVCVGPSRRRFIVRANYLNHPIFKTLLAKAEEEYGFCNHGPLAIPCDESLFEELLRVVDRPVPGLYTLEDLRRRCHVDVSGGNSESWPLLRDELIC 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1319g00015 137 Pfam Auxin responsive protein 24 98 IPR003676 GO:0009733
Vium1319g00015 137 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 26 95 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1319g00015 Vium-Chr1319 71192 71909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1319g00015 7 131 Calmodulin-binding Proteins AT4G34750 54.286 1.20e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1319g00015 K14488 - gmx:100795345 208.379