Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1319g00013 ATGGGTGAAAATGAAGAAGCGACCAATGACATGATGCAGAGGCTTCACTGTTCTTCTTCGTTTCTGAAACAGCCGTTGAACATGGAGCAACTCAGCATCCCGCAGTTCAATCCCTCTCAAATGCGCGCCAGGCATCAGCATCAGTTCGACGGTGGGAACAGTAACAAGCGCGCGGGTATGCCACCTTCGCACCCGCACCAGATCCCGCCCATTTCGCCCTACTCTCAGATCCCGGTGACGCGTCAGCAGCAAATGGGGTCGCACAACATTTCCCCTACACCCACCCACACGCGATCACTCTCGCAATCTTCCTTTTTCTCCCTCGATTCCCTCCCTCCCCTCAGCCCTTCCCCCTTCCGAGACTCCTCCTCTACGTCTGTCTCAGAAGCTGCTGACGTCTCCATGGAAGATCGTGACGTCACTTCTCATTCTCTCTTGCCACCCTCACCTTTCGCCAGAACACTCAACACCTCAACCAACAGCCATTTACCTTTACCCCCTCGCAAAGCACATAGGCGCTCTAACAGTGATATTCCGTTTGGGTTTTCCACCGTTTTGCAATCTTCGCCCCCGCTTATTCCTCTCCGGGGCAGAGAAAACCCCGTTTTGGCGAAACCTGCTCAATTGGTCAAAAGAGAAACACCGTGGGACAGGGGTGTTGACCACAGTAATGTAGAGGGATCCGGGGAGAAGAAATCCCCGGAAGGGGAAGTTGTGGATGATCTTTTCTCTGCTTACATGAATTTAGATAGCTTTGATGCGTTGAACTCTTCTGGTACCGATGACAAAAACGGGACTGAAAATCGTGATGATTTGGATAGTAGAGCGAGTGGGACCAAGACTAATGGTGGTGACAGCAGTGATAATGAAGCTGAGAGTAGTGTTAATGAGAGTGGGGATGGTGCGGCCAGGCAGGGAGGGAGTGAGAAGAGGGAAGGGATGAAGAGGAGTGCGGGTGGGGAGATTGCACCCACCACCAGGCACTATAGGAGTGTGTCCATGGATAGTTTCATTTCGAAGTTGAACTTTGGTGATGAGTCGCCGAAGCTGCCACCGTCGCCGGGGCCGAAATCTGGTTTGATTTCGCCGGCTGGTGGAGTTGATGGCAATTCATCGGCCTTCAGCTTGGAGTTTGGAAATGGGGAGTTTAGTGGGCCTGAATTGAAGAAAATTATGGCCAATGAAAAACTTGCTGAGATTGCCTTGACCGATCCAAAGCGTGCAAAAAGGATTTTGGCCAACCGGCAATCGGCTGCACGATCCAAAGAGCGGAAGATGCGGTACATATCAGAGCTAGAGCATAAGGTTCAGACACTTCAGACGGAAGCCACCACACTATCTGCACAACTTACTCTTTTACAGAGAGATTCTGCTGGACTTACTAACCAGAATAGCGAGTTGAAGTTTCGCCTTCAATCCATGGAACAACAAGCAAAGCTCCGAGATGATTATATTTCATCTCAACGTGCATGGTGA 1476 0.5081 MGENEEATNDMMQRLHCSSSFLKQPLNMEQLSIPQFNPSQMRARHQHQFDGGNSNKRAGMPPSHPHQIPPISPYSQIPVTRQQQMGSHNISPTPTHTRSLSQSSFFSLDSLPPLSPSPFRDSSSTSVSEAADVSMEDRDVTSHSLLPPSPFARTLNTSTNSHLPLPPRKAHRRSNSDIPFGFSTVLQSSPPLIPLRGRENPVLAKPAQLVKRETPWDRGVDHSNVEGSGEKKSPEGEVVDDLFSAYMNLDSFDALNSSGTDDKNGTENRDDLDSRASGTKTNGGDSSDNEAESSVNESGDGAARQGGSEKREGMKRSAGGEIAPTTRHYRSVSMDSFISKLNFGDESPKLPPSPGPKSGLISPAGGVDGNSSAFSLEFGNGEFSGPELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSELKFRLQSMEQQAKLRDDYISSQRAW 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1319g00013 491 MobiDBLite consensus disorder prediction 73 104 - -
Vium1319g00013 491 MobiDBLite consensus disorder prediction 147 164 - -
Vium1319g00013 491 CDD bZIP_plant_RF2 407 458 IPR044759 GO:0003700|GO:0006355
Vium1319g00013 491 MobiDBLite consensus disorder prediction 204 236 - -
Vium1319g00013 491 MobiDBLite consensus disorder prediction 116 131 - -
Vium1319g00013 491 Pfam bZIP transcription factor 406 464 IPR004827 GO:0003700|GO:0006355
Vium1319g00013 491 MobiDBLite consensus disorder prediction 26 48 - -
Vium1319g00013 491 FunFam probable transcription factor PosF21 405 458 - -
Vium1319g00013 491 SMART brlzneu 402 466 IPR004827 GO:0003700|GO:0006355
Vium1319g00013 491 MobiDBLite consensus disorder prediction 116 176 - -
Vium1319g00013 491 MobiDBLite consensus disorder prediction 26 104 - -
Vium1319g00013 491 MobiDBLite consensus disorder prediction 211 236 - -
Vium1319g00013 491 MobiDBLite consensus disorder prediction 343 366 - -
Vium1319g00013 491 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 94 484 - -
Vium1319g00013 491 MobiDBLite consensus disorder prediction 277 301 - -
Vium1319g00013 491 Coils Coil 422 477 - -
Vium1319g00013 491 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 404 467 IPR004827 GO:0003700|GO:0006355
Vium1319g00013 491 SUPERFAMILY Leucine zipper domain 406 457 IPR046347 GO:0003700|GO:0006355
Vium1319g00013 491 Gene3D - 405 457 - -
Vium1319g00013 491 MobiDBLite consensus disorder prediction 255 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1319g00013 Vium-Chr1319 57951 61305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1319g00013 1 482 bZIP Transcription Factor Family AT4G38900 59.725 1.95e-172 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1319g00013 bZIP_1 1.7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1319g00013 - - gmx:778145 734.561