Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1319g00011 ATGGGTGAAAATGAAGAAGCGACCAATGACATGATGCAGAGGCTTCACTGTTCTTCTTCGTTTCTGAAACAGCCGTTGAACATGGAGCAACTCAGCATCCCGCAGTTCAATCCCTCTCAAATGCGCGCCAGGCATCAGCATCAGTTCGACGGTGGGAACAGTAACAAGCGCGCGGGTATGCCACCTTCGCACCCGCACCAGATCCCGCCCATTTCGCCCTACTCTCAGATCCCGGTGACGCGTCAGCAGCAAATGGGGTCGCACAACATTTCCCCTACACCCACCCACACGCGATCACTCTCGCAATCTTCCTTTTTCTCCCTCGATTCCCTCCCTCCCCTCAGCCCTTCCCCCTTCCGAGACTCCTCCTCTACGTCTGTCTCAGAAGCTGCTGACGTCTCCATGGAAGATCGTGACGTCACTTCTCATTCTCTCTTGCCACCCTCACCTTTCGCCAGAACACTCAACACCTCAACCAACAGCCATTTACCTTTACCCCCTCGCAAAGCACATAGGCGCTCTAACAGTGATATTCCGTTTGGGTTTTCCACCGTTTTGCAATCTTCGCCCCCGCTTATTCCTCTCCGGGGCAGAGAAAACCCCGTTTTGGCGAAACCTGCTCAATTGGTCAAAAGAGAAACACCGTGGGACAGGGGTGTTGACCACAGTAATGTAGAGGGATCCGGGGAGAAGAAATCCCCGGAAGGGGAAGTTGTGGATGATCTTTTCTCTGCTTACATGAATTTAGATAGCTTTGATGCGTTGAACTCTTCTGGTACCGATGACAAAAACGGGACTGAAAATCGTGATGATTTGGATAGTAGAGCGAGTGGGACCAAGACTAATGGTGGTGACAGCAGTGATAATGAAGCTGAGAGTAGTGTTAATGAGAGTGGGGATGGTGCGGCCAGGCAGGGAGGGAGTGAGAAGAGGGAAGGGATGAAGAGGAGTGCGGGTGGGGAGATTGCACCCACCACCAGGCACTATAGGAGTGTGTCCATGGATAGTTTCATTTCGAAGTTGAACTTTGGTGATGAGTCGCCGAAGCTGCCACCGTCGCCGGGGCCGAAATCTGGTTTGATTTCGCCGGCTGGTGGAGTTGATGGCAATTCATCGGCCTTCAGCTTGGAGTTTGGAAATGGGGAGTTTAGTGGGCCTGAATTGAAGAAAATTATGGCCAATGAAAAACTTGCTGAGATTGCCTTGACCGATCCAAAGCGTGCAAAAAGGATTTTGGCCAACCGGCAATCGGCTGCACGATCCAAAGAGCGGAAGATGCGGTACATATCAGAGCTAGAGCATAAGGTTCAGACACTTCAGACGGAAGCCACCACACTATCTGCACAACTTACTCTTTTACAGAGAGATTCTGCTGGACTTACTAACCAGAATAGCGAGTTGAAGTTTCGCCTTCAATCCATGGAACAACAAGCAAAGCTCCGAGATGCCCTAAATGAGGCGCTTACTGCTGAGGTTCAAAGACTAAAGCTTGCTACAGCTGAACTGAGTGGGGATTCACATGGTTCTAGCTGTTTGATTCCTCAGCATTCTGTCAACCCTCTGATGTTTCAGCAGCAGCAGCCTCCCACTGCATCCCAACAAAACATTCATCTTCAACATCAACAGCAACAGCAGCAGCACCACCAGAATGGTAATGGCAACTCCAATTCCGACATAAAACAATAG 1686 0.5047 MGENEEATNDMMQRLHCSSSFLKQPLNMEQLSIPQFNPSQMRARHQHQFDGGNSNKRAGMPPSHPHQIPPISPYSQIPVTRQQQMGSHNISPTPTHTRSLSQSSFFSLDSLPPLSPSPFRDSSSTSVSEAADVSMEDRDVTSHSLLPPSPFARTLNTSTNSHLPLPPRKAHRRSNSDIPFGFSTVLQSSPPLIPLRGRENPVLAKPAQLVKRETPWDRGVDHSNVEGSGEKKSPEGEVVDDLFSAYMNLDSFDALNSSGTDDKNGTENRDDLDSRASGTKTNGGDSSDNEAESSVNESGDGAARQGGSEKREGMKRSAGGEIAPTTRHYRSVSMDSFISKLNFGDESPKLPPSPGPKSGLISPAGGVDGNSSAFSLEFGNGEFSGPELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKLATAELSGDSHGSSCLIPQHSVNPLMFQQQQPPTASQQNIHLQHQQQQQQHHQNGNGNSNSDIKQ 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1319g00011 561 MobiDBLite consensus disorder prediction 73 104 - -
Vium1319g00011 561 MobiDBLite consensus disorder prediction 147 164 - -
Vium1319g00011 561 CDD bZIP_plant_RF2 407 458 IPR044759 GO:0003700|GO:0006355
Vium1319g00011 561 MobiDBLite consensus disorder prediction 116 131 - -
Vium1319g00011 561 MobiDBLite consensus disorder prediction 204 236 - -
Vium1319g00011 561 MobiDBLite consensus disorder prediction 26 48 - -
Vium1319g00011 561 SMART brlzneu 402 466 IPR004827 GO:0003700|GO:0006355
Vium1319g00011 561 MobiDBLite consensus disorder prediction 116 176 - -
Vium1319g00011 561 MobiDBLite consensus disorder prediction 26 104 - -
Vium1319g00011 561 MobiDBLite consensus disorder prediction 211 236 - -
Vium1319g00011 561 MobiDBLite consensus disorder prediction 343 366 - -
Vium1319g00011 561 MobiDBLite consensus disorder prediction 277 301 - -
Vium1319g00011 561 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 94 553 - -
Vium1319g00011 561 Coils Coil 422 477 - -
Vium1319g00011 561 MobiDBLite consensus disorder prediction 524 561 - -
Vium1319g00011 561 Pfam bZIP transcription factor 406 464 IPR004827 GO:0003700|GO:0006355
Vium1319g00011 561 Gene3D - 405 458 - -
Vium1319g00011 561 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 404 467 IPR004827 GO:0003700|GO:0006355
Vium1319g00011 561 SUPERFAMILY Leucine zipper domain 406 457 IPR046347 GO:0003700|GO:0006355
Vium1319g00011 561 MobiDBLite consensus disorder prediction 255 328 - -
Vium1319g00011 561 FunFam probable transcription factor PosF21 405 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1319g00011 Vium-Chr1319 57951 61875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1319g00011 1 525 bZIP Transcription Factor Family AT4G38900 59.239 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1319g00011 bZIP_1 2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1319g00011 - - gmx:780560 837.41