LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium13186g00003	ATGGGGTGTGTGAGCTCGAAGCAGGCGGTCTCCGTGACGCCGGCGATTGACCACTCGGGCGCGTTTCGGAGCAATGCTGCGGTTCTGGGCGAGTCGGAGCGCAAGGAGAAGAAGAGGAGCAAGAAGAGGACCGAGTCGGGGGGAGCGAGTCAGAGCGAGGTCGGTGAGTCGGGGAGAACGAGTTCCAATTGTGAATCGTTGAGCTTCAGGTTGGGGAACCTTCACAAGTACGTGCAGGGAGAACACGTGGCCGCCGGCTGGCCAGCGTGGCTCAGCGCCGTCGCCGGCGAAGCCATTCACGGCTGGGTCCCCCTCTGCGCCGATGCCTTCGAAAAACTTGAGAAGATAGGGCAGGGAACGTATAGCAGTGTGTTTCGGGCGAGGGAGCTTGAGACGGGGAAGATAGTGGCATTGAAGAAGGTGCGGTTCGACAATTTCGAACCGGAGAGTGTGCGGTTCATGGCGCGTGAGATATTGATTCTGCGACGCCTTGATCATCCCAATATAATAAAGCTTGAGGGCTTGATTACTTCGAGGCTGTCCTGTAGCATTTACCTCGTCTTTGAGTACATGGAGCATGACATCACAGGGCTCTTGTCTTCCCCTGATATCAAATTCACTGAACCACAGATTAAGTGCTACATGAAGCAGTTGTTGGCTGGTCTTGAGCACTGTCACTTGCGGGGAGTCATGCATAGGGATATTAAGGGGTCGAATCTTTTGGTAAATAATGAAGGGGTTTTGAAGGTAGCGGATTTTGGGTTGGCGAATTATGTCAGTTCTGGGCACAGGCAACCTCTGACTAGTCGTGTTGTTACCTTGTGGTACCGGCCGCCAGAGCTTTTGCTTGGTTCGACGGACTATGGTCCGGCCGTGGATCTCTGGAGTGTTGGTTGAGTGTTTGCGGAGCTACTTGTCGGGAAGCCTATACTTCAGGGGAGAACGGAGGTTGAACAATTGCACAAAATTTTTAAGCTCTGTGGCTCACCACCTGATGAATACTGGAAAAAGACTAAACTTCCTCATGCAACGTTATTTAAGCCACAACAACCATATGATAGTTGCCTTCGACAATCCTTTAAAGATTTGCCAGCGGCCAGTGTACATCTGCTACAAACTCTTCTTTCTGTAGAACCATACAAACGTGGGAGTGCTACATCTGCTCTTTCATCGGAGTATTTCAAAACAAAACCTTATGCGTGTGACCCATCGACCTTGCCGATATACCCACCTAGCAAGGAAATCGATGCAAAACACAGGGAAGAGTCAAGGAAAAAGATTAGTGGACGAGTTCGTGGAACTGAAACAAGAAAACCATCCAGAAAGCCACACGGAGTCAGTAAACTAGCCCCAGCAGAGGATTTCGCAAGTCAAACTCAGACTTCCCAGAAGGTCAATGGTAGATCTTTCCGCAACCCTGAAGAAGAGAAGATTAAAATAGGTGGCAAAACACAGAAGTCATCTAGTGGTAAAGCTGAAGATGCTTCCCATACGAAGAATGCTTCTCAAGGAGATATTCCCCTTTCCGGGCCGTTACAGGTTTCAACATCAAGTGGATTTGCATGGGCAAAAAGCAGAAAAGATGACGCTTCATTTCGATCCCATTGTCGAAATATTTCAAGAGGACATATTTTCAATCCATCAGAACCTTCTACATTAAATTTAAGGAATAATTTGGACACCACAAACCAGGAAAATAAAGAGTTTTGTGGGGGAGGCGTCAATTCTAGGGGCCATCAGCTGCTTGAAATTTCTAAGCTTTCAATGCAGAACCCGTGGAGTAAGTTTGATCGCCCAGATTCATTTGATGCTTCGGATGAGTACCATTCACAAGAACTGTCTATGGCCATATATCACCGAGAAGATTCAGCATCCAAGAGAAATAACCTGAGTTTTCAAGATCAAGGAGAAAGGGTTGAATTTTCTGGGCCCCTACTATCTCAAATGCACACTGTTGATGAGCTCTTGGAAAGGCATGAGCGTCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAAGGCGAAAAAGTAA	2043	0.4816	MGCVSSKQAVSVTPAIDHSGAFRSNAAVLGESERKEKKRSKKRTESGGASQSEVGESGRTSSNCESLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWVPLCADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFTEPQIKCYMKQLLAGLEHCHLRGVMHRDIKGSNLLVNNEGVLKVADFGLANYVSSGHRQPLTSRVVTLWYRPPELLLGSTDYGPAVDLWSVGXVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQQPYDSCLRQSFKDLPAASVHLLQTLLSVEPYKRGSATSALSSEYFKTKPYACDPSTLPIYPPSKEIDAKHREESRKKISGRVRGTETRKPSRKPHGVSKLAPAEDFASQTQTSQKVNGRSFRNPEEEKIKIGGKTQKSSSGKAEDASHTKNASQGDIPLSGPLQVSTSSGFAWAKSRKDDASFRSHCRNISRGHIFNPSEPSTLNLRNNLDTTNQENKEFCGGGVNSRGHQLLEISKLSMQNPWSKFDRPDSFDASDEYHSQELSMAIYHREDSASKRNNLSFQDQGERVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKAKK	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium13186g00003	680	ProSitePatterns	Protein kinases ATP-binding region signature.	116	139	IPR017441	GO:0005524
	Vium13186g00003	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	230	242	IPR008271	GO:0004672\|GO:0006468
	Vium13186g00003	680	ProSiteProfiles	Protein kinase domain profile.	110	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium13186g00003	680	Gene3D	Transferase(Phosphotransferase) domain 1	193	432	-	-
	Vium13186g00003	680	PANTHER	CELL DIVISION PROTEIN KINASE	108	398	-	-
	Vium13186g00003	680	Pfam	Protein kinase domain	110	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium13186g00003	680	SUPERFAMILY	Protein kinase-like (PK-like)	103	401	IPR011009	-
	Vium13186g00003	680	SMART	serkin_6	110	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium13186g00003	680	MobiDBLite	consensus disorder prediction	453	468	-	-
	Vium13186g00003	680	MobiDBLite	consensus disorder prediction	413	442	-	-
	Vium13186g00003	680	MobiDBLite	consensus disorder prediction	24	59	-	-
	Vium13186g00003	680	FunFam	probable serine/threonine-protein kinase At1g54610	97	192	-	-
	Vium13186g00003	680	MobiDBLite	consensus disorder prediction	405	515	-	-
	Vium13186g00003	680	CDD	STKc_CDK9_like	110	394	-	-
	Vium13186g00003	680	Gene3D	Phosphorylase Kinase; domain 1	97	192	-	-
	Vium13186g00003	680	MobiDBLite	consensus disorder prediction	29	46	-	-
	Vium13186g00003	680	MobiDBLite	consensus disorder prediction	483	515	-	-
	Vium13186g00003	680	FunFam	probable serine/threonine-protein kinase At1g54610	193	433	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium13186g00003	Vium-Chr13186	50376	57716	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium13186g00003	102	426	Core Cell Cycle Gene Families	AT5G10270	51.320	3.36e-114	351

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vium13186g00003		Pkinase	4.4e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium13186g00003	-		-	var:108332003	1318.91