Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13186g00001 ATGAGTTTTGCCAAAACAACAAAAAGTACACAGAGCACAAGAAAAGAAGGAGGGTCATCATTAATGTCAGAGCAGGAAACCGATTCATGGGGCTTCCTGTTTGTCTGTTTCTTGATCCTTTTCTCAGGTAAATTGGTTGTTGGGGATTCGTTGGCCACTGACGCAGAAGTTCTGCTGAAGCTGAAATCTTATTTGCTTGCCCAAACTCGTACGAACAGAGGAGGGTACATAAGCTGGAACAAGAACAGTTCAAATCCTTGTCAATGGTCAGGAATCGATTGCAGCCTCTTGAACGGGACAACACTGAGGGTTGTGAAAGTAGACATCTCTTACAGTGAAATTTATGGTAATATATTCGATGGGTTCTCTAATCTCACTGAGCTCAGACACCTTGACATCTCTTGGAACTCTCTCTCTGGGGGGATTCCTGAGGACTTGAGGATGAGCCAGAAGCTTGTGTATCTCAATCTCTCCCATAATACTCTCGATGGGGAGTTGAATCTGAAGGGATTGACTCAGTTGCAAACCGTGGACTTGTCTGTTAATAGGTTCCGTGGGGAACTTGGGCTGAGTTTCCCTGCCATTTGTGACAGTTTGGTGACTTTAAATGTTTCAGATAATCACTTGAGTGGTGGGATTCATGGCTTCTTTGATCAATGCTTCAGTTTGCAGCACTTGGATTTGAGCACCAACCATCTTAATGGAACCTTGTGGGCTGGATTTTCCAGGCTGAGACAGTTTTCAATCTCAGAGAATTTTCTCACTGGGGTTGTTCCTCCCCAGGCTTTTCCAGTAAACTGTAGCACCGAAAAACTGGACCTTTCAGTGAATTTATTTGTTGGTAAAGTCCCCGAGGAGGTGTCCAACTGCAAGAACTTAGTGGTTCTCAACCTCTCTAGTAACAATTTCACGGGAGATATTCCCCGTGAAATTGGTTCCATTTCTGGTCTTCAGGGATTGTTCTTGGCGAACAATACTTTCTCAAGGGATATCCCAGAGACCCTTTTGACCTTGACCAATTTGTTCATCTTGGATTTGAGCAGAAACCAATTTGGTGGGGAAGTGCAGGAGATTTTTGGGAAATTCAAGCAACTGAACTTTCTTTTGCTGCACTCAAATTCCTACACTGGAGGGTTGAACTCATCAGGCATTTTTACATTGACAAACCTTGGACGTTTGGACTTAAGCTTCAATAATTTTTCTGGTCCATTACCTGTTGAAATCTCAGAAATGTCTGCACTCGCTTTCTTAACCTTAACCTACAACCAGTTCTCTGGACCTATTCCTCCTGAATTGGGAAAGTTGACTCACCTTATGGCACTTGATCTTGCCTTCAACAATTTCAGTGGAACGATCCCACCAAGCCTTGGAAACTTGACTTCTCTCTTATGGCTAACCCTTTCAGATAATTCATTAACCGGAGAAATCCCACCAGAGTTGGGAAACTGCTCGAGCATGTTATGGCTAAACCTTGCAAACAACAAACTATATGGAAAAATTCCCTCCGATCTAACAAGAATTGGAAGGAATGCAAGGGCCACATTTGAATCAAATGAAAAGAGTCTTGGGGGAGTTGTTGCTGGCAATAGTGAGTGCTTAGGAATGAAGAGATGGATACCTGCTGATTACCCTCCGTTCAGCTTTGTGTATACCATCCTGACAAGGAAGAATTGTAGGGCCCTTTGGGACAGGTTGCTCAAAGGATATGGTATCTTCCCCATGTGTACTTCTGATCCCTCTGCTAGATCATCACACATAGCAGGGTATGTTCAGCTAAGTGGGAACGATTTGAGTGGAGAGATTCCTTCAGAAATTGGAAATATGGTAAACTTTAGCATGTTGCATTTGGGAGATAACAAGTTCACTGGGAAATTCCCTCCAGGGATGGTAGGTTTACCACTCGTAGTCTTGAACATGACCAGAAACAATTTTTCTGGTGAAATTCCAAGTGAAATTGGCAACATGAAGTGTCTACAGGATCTTGATTTGTCTAGGAACAATTTCTCTGGAACATTTCCCATAAGTCTGGCACACTTGGATGAGCTTAGCAGGTTCAACATCTCATACAATCCCCTCATATCTGGTACAGTCCCACCATCCGGACACTTACTCACTTTTGACAAGGATTCATATTTGGGTGACCCCCACCTGAAACTCCCAAAGTTCTTTAACATCTCTGATGATAGAAATAGCACATTACAAAGAGTCTTGAAAAATCCCACAAAATGGTCATTGGTTTTGGCTCTAGGATTAGCTATCGTGGTCTTTGGACTTCTTTTCCTTGTAATATGTTTCTTGGTGAAAAGTCCATCAGTGGAACCAGAGAATCTCATGAAGAAAATAAAGAATAAGAAAGCACATGATTCAGGAAGCTCGGGATCTTCACCATGGTATTCTGACACAGTTAAGATATTCCACCTGAACAAGACAGTTTTCACACATGCAGACATCTTGAAAGCAACCTCCAACTTCACGGAGGAAAGAGTCATAGGAAGGGGTGGCTATGGAACAGTATATAGAGGGTCATTTCCGGATGGGAGAGAGGTGGCAGTGAAGAAGCTCCAAAGGGAAGGAACTGAGGGTGAAAAAGAATTCAGAGCTGAAATGAAGGTTCTAAGTGGTCAGGGATTTAGCTGGCCTCATCCAAACCTTGTCACACTCTATGGTTGGTGCCTCTATGGTTCACAGAAGATACTTGTTTATGAGTACATAGGAGGTGGAAGCTTGGAGGAACTTGTGACTGATACAAAAAGGTTGAAATGGAGGAGGCGCCTAGAAGTGGCAATTGATGTGGCTAGGGCACTTGTCTATTTACATCATGAGTGCTACCCTTCTATTGTGCATAGAGATGTGAAGGCCAGTAATGTGTTGCTAGACAAGAATGGGAAGGCCAAGGTCACAGACTTTGGACTTGCTAGGATTGTTGATGTTGGAGACAGTCACGTGAGCACTATAGTGGCTGGCACAGTGGGGTATGTTGCACCAGAATATGGACAAACATGGAAAGCCACCACAAAAGGGGATGTGTACAGCTTTGGGGTTTTGGTTATGGAGCTAGCAACTGGGAGAAGAGCAGTGGATGGAGGAGAAGAGTGTTTGGTGGAATGGACTAGGCGTGTTATGATGGCTTCTGGAAGACAAGGGTTAGGTCAATCTGTGCAAGTTTTTTTGAAGGTAAGTGGGGTGGTTGAGGGTGCTAAGGAGATGGGTGAGTTGCTCCAAGTTGGAGTGAAATGCACACATGATGCACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGCCATGCTTATTAAGATATACGATCCCACTGGGGACTCAAATTATGGACACCTTGTGTAG 3342 0.4375 MSFAKTTKSTQSTRKEGGSSLMSEQETDSWGFLFVCFLILFSGKLVVGDSLATDAEVLLKLKSYLLAQTRTNRGGYISWNKNSSNPCQWSGIDCSLLNGTTLRVVKVDISYSEIYGNIFDGFSNLTELRHLDISWNSLSGGIPEDLRMSQKLVYLNLSHNTLDGELNLKGLTQLQTVDLSVNRFRGELGLSFPAICDSLVTLNVSDNHLSGGIHGFFDQCFSLQHLDLSTNHLNGTLWAGFSRLRQFSISENFLTGVVPPQAFPVNCSTEKLDLSVNLFVGKVPEEVSNCKNLVVLNLSSNNFTGDIPREIGSISGLQGLFLANNTFSRDIPETLLTLTNLFILDLSRNQFGGEVQEIFGKFKQLNFLLLHSNSYTGGLNSSGIFTLTNLGRLDLSFNNFSGPLPVEISEMSALAFLTLTYNQFSGPIPPELGKLTHLMALDLAFNNFSGTIPPSLGNLTSLLWLTLSDNSLTGEIPPELGNCSSMLWLNLANNKLYGKIPSDLTRIGRNARATFESNEKSLGGVVAGNSECLGMKRWIPADYPPFSFVYTILTRKNCRALWDRLLKGYGIFPMCTSDPSARSSHIAGYVQLSGNDLSGEIPSEIGNMVNFSMLHLGDNKFTGKFPPGMVGLPLVVLNMTRNNFSGEIPSEIGNMKCLQDLDLSRNNFSGTFPISLAHLDELSRFNISYNPLISGTVPPSGHLLTFDKDSYLGDPHLKLPKFFNISDDRNSTLQRVLKNPTKWSLVLALGLAIVVFGLLFLVICFLVKSPSVEPENLMKKIKNKKAHDSGSSGSSPWYSDTVKIFHLNKTVFTHADILKATSNFTEERVIGRGGYGTVYRGSFPDGREVAVKKLQREGTEGEKEFRAEMKVLSGQGFSWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEELVTDTKRLKWRRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKNGKAKVTDFGLARIVDVGDSHVSTIVAGTVGYVAPEYGQTWKATTKGDVYSFGVLVMELATGRRAVDGGEECLVEWTRRVMMASGRQGLGQSVQVFLKVSGVVEGAKEMGELLQVGVKCTHDAPQARPNMKEVLAMLIKIYDPTGDSNYGHLV 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13186g00001 1113 Gene3D Ribonuclease Inhibitor 267 353 IPR032675 -
Vium13186g00001 1113 SMART LRR_typ_2 387 411 IPR003591 -
Vium13186g00001 1113 SMART LRR_typ_2 338 361 IPR003591 -
Vium13186g00001 1113 SMART LRR_typ_2 435 458 IPR003591 -
Vium13186g00001 1113 SMART LRR_typ_2 125 149 IPR003591 -
Vium13186g00001 1113 SMART LRR_typ_2 459 483 IPR003591 -
Vium13186g00001 1113 SUPERFAMILY L domain-like 258 508 - -
Vium13186g00001 1113 SUPERFAMILY L domain-like 590 708 - -
Vium13186g00001 1113 CDD STKc_IRAK 830 1100 - -
Vium13186g00001 1113 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 267 1099 - -
Vium13186g00001 1113 Gene3D Phosphorylase Kinase; domain 1 791 903 - -
Vium13186g00001 1113 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 904 1105 - -
Vium13186g00001 1113 SMART serkin_6 824 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13186g00001 1113 FunFam Putative LRR receptor-like serine/threonine-protein kinase 362 524 - -
Vium13186g00001 1113 Gene3D Ribonuclease Inhibitor 354 524 IPR032675 -
Vium13186g00001 1113 Pfam Leucine Rich Repeat 128 146 IPR001611 GO:0005515
Vium13186g00001 1113 Pfam Protein kinase domain 824 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13186g00001 1113 ProSiteProfiles Protein kinase domain profile. 824 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13186g00001 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 946 958 IPR008271 GO:0004672|GO:0006468
Vium13186g00001 1113 Pfam Leucine rich repeat N-terminal domain 52 95 IPR013210 -
Vium13186g00001 1113 SUPERFAMILY Protein kinase-like (PK-like) 802 1098 IPR011009 -
Vium13186g00001 1113 Gene3D Ribonuclease Inhibitor 50 194 IPR032675 -
Vium13186g00001 1113 Gene3D Transferase(Phosphotransferase) domain 1 905 1108 - -
Vium13186g00001 1113 SUPERFAMILY L domain-like 103 308 - -
Vium13186g00001 1113 MobiDBLite consensus disorder prediction 1 22 - -
Vium13186g00001 1113 FunFam Leucine-rich repeat receptor protein kinase MSP1 786 903 - -
Vium13186g00001 1113 Gene3D Ribonuclease Inhibitor 195 266 IPR032675 -
Vium13186g00001 1113 Gene3D Ribonuclease Inhibitor 588 731 IPR032675 -
Vium13186g00001 1113 ProSitePatterns Protein kinases ATP-binding region signature. 830 853 IPR017441 GO:0005524
Vium13186g00001 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 259 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13186g00001 Vium-Chr13186 3304 7440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13186g00001 87 1100 Receptor kinase-like Gene Family AT5G07280 32.823 1.82e-144 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Vium13186g00001 Pkinase 5.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13186g00001 - - gmx:100781769 1887.46