Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13174g00005 ATGACACCCCTCAAACTGCATCACTTCCTCCTTCTCATGTTCATCTTCTTCTTCTTCCACTTGCTCCCTTCTTCCCACGCCCAAACGCCACGTCAGGAGAACAACACGGGCTTCACGTGCACGGGCACCCGCACCTGCGCCGCCTACGCCTTCTACCGTGCCTCCGCCCCCAACTTCCTGGACCTGGCGGCCGTGGGCGACCTCTTCGAGGTGAGCCGCCTAATGATAGCCACGCCGAGCAACATCTCCTCCGTGTCCTCTGCCCTGGTCGAAGACCAGCCCCTCTTCGTCCCTCTGACCTGCTCCTGCAACCCCGTGAATGCCACCTTCGGGTCCCTCTCCTACGCCAACATCTCCTACGCCATCCAACCCAACGACACCTTCTTCGTCGTCTCCACCTACAAGTTCAACAACCTCACCACCTACCCTTCCGTCGAAACCGTCAACCCCACCTTGGTCGCCACCAACCTCTCCATCGGCCAGGTCACCATCTTTCCTGTCTTCTGCAAATGCCCCGAAACCAACAACACTAACTATATGATCTCCTACGTTGTGCAACCCGAGGACAACATCTCCTCCATTGCCTCAGCTTTTGGGGTTCAGGAACAGGATATAATTGACGTCAACAACGACACACTCCATGATTACGACACCATTTTCATCCCTGTGGAGCAGCTTCCGTCTCTGTCGCAGCCTGCGGTGGCTCCGGCTGCGCCCCCTGGTGGGAATGGGAGTGACACTGGGAGTGGGAGTGGCAATGATAGAACTGGAACTGTTAGAGGGTTGGGGATTGGGTTGGGGGTGGTGGGGATGTTATTGGTGTTGGTAAGTGGGTTGTGGTTGTGGAGAGAGTTTGTGATGAAGAAAAGGTTGGGATATGAGGATGAGGAGGAGGAGGGAGGGAGGAAGAAGGTGTATTCGGGAGGCAAAGAGGGACAGAAAGGGGATTTGGATGTGAAACTGATGGCAAATGTGTCGGATTGTTTGGACAAGTATAGGGTTTTTGATGTTGAGGAACTGGTGGAGGCCACTAATGGGTTTGATGGAAGGTCCTTGATTGAGGGATCCGTTTACAAAGGGGAGATTGATGGGGAGCTCTTTGCCATCAAGAAGATGAAATGGAATGCCTATGAGGAACTCAAGATCTTGCAGAAGGTAAACCATGGGAATCTTGTGAAGTTGGAGGGATTCTGCATAGACCCAGAAGAAGCAAACTGCTATCTAGTCTATGAATATGTGGAGAATGGATCTCTATACTCGTGGTTGCATGAGGAGAGAAAGGAAAAGTTGAACTGGAAAACAAGGCTAAGAATAGCCGTTGACATTGCCAACGGCCTCCAATACATCCACGAGCACACAAGGCCACGAGTTGTGCACAAAGACATCAAGAGCAGCAACATTCTGTTGGACTACAACAAGAGAGCCAAAATTGCAAATTTTGGGCTTGCAAAGTCTGGAATGAATGCCATCACCATGCACATTGTGGGAACACAGGGCTACATTGCCCCTGAATATCTGGCTGATGGTGTGGTCTCCACAAAGATGGATGTGTTCTCTTTTGGGGTTGTGTTACTTGAACTAATTTCTGGGAAGGAAGCCATTGATAAGGAGGGAAATCTGTTGTGGGAAAGTGCCATCAGAACCTTTGAAGTGGACAGTGAGCAAGAGAAGGCTAGGAGAGTGAGGGAATGGATGGATAAGGACATTTTAAGGGAGACATGTTCAATGGAAAGTTTGATGGGTGTTCTCACTGTTGCAATTGCTTGCTTGCAGAAAGACCAGTCAAAGAGGCCAAGCATAATGGACATTGTCTATGCACTGTGTAAAAGTGAAGATTTGGGCTTTGACATCTCAGATGATGGGTTTGGCTCACCACGGGTGGTGGCTAGGTAG 1893 0.5061 MTPLKLHHFLLLMFIFFFFHLLPSSHAQTPRQENNTGFTCTGTRTCAAYAFYRASAPNFLDLAAVGDLFEVSRLMIATPSNISSVSSALVEDQPLFVPLTCSCNPVNATFGSLSYANISYAIQPNDTFFVVSTYKFNNLTTYPSVETVNPTLVATNLSIGQVTIFPVFCKCPETNNTNYMISYVVQPEDNISSIASAFGVQEQDIIDVNNDTLHDYDTIFIPVEQLPSLSQPAVAPAAPPGGNGSDTGSGSGNDRTGTVRGLGIGLGVVGMLLVLVSGLWLWREFVMKKRLGYEDEEEEGGRKKVYSGGKEGQKGDLDVKLMANVSDCLDKYRVFDVEELVEATNGFDGRSLIEGSVYKGEIDGELFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDPEEANCYLVYEYVENGSLYSWLHEERKEKLNWKTRLRIAVDIANGLQYIHEHTRPRVVHKDIKSSNILLDYNKRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGKEAIDKEGNLLWESAIRTFEVDSEQEKARRVREWMDKDILRETCSMESLMGVLTVAIACLQKDQSKRPSIMDIVYALCKSEDLGFDISDDGFGSPRVVAR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13174g00005 630 Gene3D Phosphorylase Kinase; domain 1 316 412 - -
Vium13174g00005 630 CDD LysM 181 221 IPR018392 -
Vium13174g00005 630 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 13 609 - -
Vium13174g00005 630 SUPERFAMILY LysM domain 181 216 IPR036779 -
Vium13174g00005 630 ProSiteProfiles Protein kinase domain profile. 337 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13174g00005 630 FunFam PTI1-like tyrosine-protein kinase 3 413 612 - -
Vium13174g00005 630 MobiDBLite consensus disorder prediction 231 256 - -
Vium13174g00005 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Vium13174g00005 630 Pfam LysM domain 183 221 IPR018392 -
Vium13174g00005 630 SMART LysM_2 182 222 IPR018392 -
Vium13174g00005 630 SUPERFAMILY Protein kinase-like (PK-like) 333 607 IPR011009 -
Vium13174g00005 630 Gene3D Transferase(Phosphotransferase) domain 1 413 616 - -
Vium13174g00005 630 SMART serkin_6 347 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13174g00005 630 Pfam Protein kinase domain 364 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13174g00005 630 Gene3D LysM domain 180 222 IPR036779 -
Vium13174g00005 630 ProSiteProfiles LysM domain profile. 181 227 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13174g00005 Vium-Chr13174 28706 32603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13174g00005 9 609 Receptor kinase-like Gene Family AT2G23770 33.122 1.60e-85 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium13174g00005 Pkinase 8.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13174g00005 - - gmx:100802872 892.878